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CmoCh14G011160 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G011160
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpentatricopeptide repeat-containing protein At1g10910, chloroplastic
Genome locationCmo_Chr14:7586955..7587281
RNA-Seq ExpressionCmoCh14G011160
SyntenyCmoCh14G011160
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581658.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.7e-4696.91Show/hide
Query:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF
        MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIA++PKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF

KAG7018152.1 Pentatricopeptide repeat-containing protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]4.7e-4696.91Show/hide
Query:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF
        MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIA++PKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF

XP_022930554.1 pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Cucurbita moschata]1.6e-4698.97Show/hide
Query:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF
        MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF

XP_022980545.1 pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Cucurbita maxima]2.6e-4496.91Show/hide
Query:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF
        MELSVIGNGYHRHLLQTRLPTP SVMASAPHSVPRLKNHRPNSIAI+PKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF

XP_023528492.1 pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Cucurbita pepo subsp. pepo]1.8e-4595.88Show/hide
Query:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF
        MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIA++PK PQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF

TrEMBL top hitse value%identityAlignment
A0A0A0LI66 Uncharacterized protein9.6e-3777.45Show/hide
Query:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARFFFY
        MELS++ NGYHRH+L+TRLPTPSSVMASA H+V  +KN++ NS+AILPK+PQFLP S N KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALARFFF 
Subjt:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARFFFY

Query:  FL
        +L
Subjt:  FL

A0A1S3CN74 pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X14.7e-3679.38Show/hide
Query:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF
        MELS++GNGYHRH+L+TRLPTP SVMASA H+VP LKN++ NS+AILPK+PQFLP S N KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF

A0A5A7URC2 Pentatricopeptide repeat-containing protein4.7e-3679.38Show/hide
Query:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF
        MELS++GNGYHRH+L+TRLPTP SVMASA H+VP LKN++ NS+AILPK+PQFLP S N KL NG Q+RHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF

A0A6J1ERS3 pentatricopeptide repeat-containing protein At1g10910, chloroplastic7.8e-4798.97Show/hide
Query:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF
        MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF

A0A6J1IWQ9 pentatricopeptide repeat-containing protein At1g10910, chloroplastic1.2e-4496.91Show/hide
Query:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF
        MELSVIGNGYHRHLLQTRLPTP SVMASAPHSVPRLKNHRPNSIAI+PKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALAR+
Subjt:  MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCATCTCCTTCAGACTCGGTTGCCCACTCCTTCTTCTGTAATGGCTTCTGCACCGCATTCTGTCCCCAGGCTCAA
GAATCATCGCCCTAACTCTATCGCCATTCTCCCTAAACAGCCTCAATTCCTCCCCGACTCCCCAAATGGTAAGCTCTCCAATGGCGGCCAGAGGCGCCACTCGAAGTCAT
ACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAGGACTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGTTCTTCTTCTACTTCTTGAAATGTGTATTTGGACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCATCTCCTTCAGACTCGGTTGCCCACTCCTTCTTCTGTAATGGCTTCTGCACCGCATTCTGTCCCCAGGCTCAA
GAATCATCGCCCTAACTCTATCGCCATTCTCCCTAAACAGCCTCAATTCCTCCCCGACTCCCCAAATGGTAAGCTCTCCAATGGCGGCCAGAGGCGCCACTCGAAGTCAT
ACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAGGACTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGTTCTTCTTCTACTTCTTGAAATGTGTATTTGGACTTTGA
Protein sequenceShow/hide protein sequence
MELSVIGNGYHRHLLQTRLPTPSSVMASAPHSVPRLKNHRPNSIAILPKQPQFLPDSPNGKLSNGGQRRHSKSYLERQSAIAQVKDCSELAPALARFFFYFLKCVFGL