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CmoCh14G011230 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G011230
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerase
Genome locationCmo_Chr14:7814920..7818695
RNA-Seq ExpressionCmoCh14G011230
SyntenyCmoCh14G011230
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007641 - RNA polymerase Rpb2, domain 7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_024934656.1 DNA-directed RNA polymerase III subunit 2-like isoform X1 [Ziziphus jujuba]3.8e-0780Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
        GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
XP_024934658.1 DNA-directed RNA polymerase III subunit 2-like isoform X2 [Ziziphus jujuba]3.8e-0780Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
        GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
XP_024934659.1 DNA-directed RNA polymerase III subunit 2-like isoform X3 [Ziziphus jujuba]3.8e-0780Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
        GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
XP_024934661.1 DNA-directed RNA polymerase III subunit 2-like isoform X4 [Ziziphus jujuba]3.8e-0780Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
        GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
XP_024934662.1 DNA-directed RNA polymerase III subunit 2-like isoform X5 [Ziziphus jujuba]3.8e-0780Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
        GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
TrEMBL top hitse value%identityAlignment
A0A6P6GKM6 DNA-directed RNA polymerase1.8e-0780Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
        GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
A0A6P6GKN1 DNA-directed RNA polymerase1.8e-0780Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
        GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
A0A6P6GKP7 DNA-directed RNA polymerase1.8e-0780Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
        GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
A0A6P6GKR2 DNA-directed RNA polymerase1.8e-0780Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
        GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
A0A6P6GLI1 DNA-directed RNA polymerase1.8e-0780Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
        GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
SwissProt top hitse value%identityAlignment
F4KD38 DNA-directed RNA polymerase III subunit 25.5e-0975Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
        GLRVGEMERDCLIAYGAS+LI+  LM+SS PFEVQ    C
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
P22276 DNA-directed RNA polymerase III subunit RPC29.7e-0651.85Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGCRHNMCQGEELVGHS
        GLR+GEMERDC+IAYGAS L+   LM+SS  FEV        ++C    L+G+S
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGCRHNMCQGEELVGHS
P25167 DNA-directed RNA polymerase III subunit RPC26.7e-0742.5Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGCRH-------NMCQGEELVGHSSPPQ----LFRDFKLADVI
        GLR+GEMERDCLI+YGAS+LI   LM+SS  FEV     C         + CQ    V   S P     LF++    +V+
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGCRH-------NMCQGEELVGHSSPPQ----LFRDFKLADVI
P59470 DNA-directed RNA polymerase III subunit RPC27.4e-0670.59Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEV
        GLR+GEMERDCLI YGAS+L+   LM+SS  FEV
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEV
Q9NW08 DNA-directed RNA polymerase III subunit RPC27.4e-0670.59Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEV
        GLR+GEMERDCLI YGAS+L+   LM+SS  FEV
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEV
Arabidopsis top hitse value%identityAlignment
AT5G45140.1 nuclear RNA polymerase C23.9e-1075Show/hide
Query:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC
        GLRVGEMERDCLIAYGAS+LI+  LM+SS PFEVQ    C
Subjt:  GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTTCTCTATTTTTCAGGACTACGAGTAGGAGAAATGGAACGTGATTGTTTGATTGCTTATGGTGCTAGCTTGCTGATTTTTGGATGCTTGATGGTCTCGAGCTA
TCCTTTTGAAGTTCAGGGAGTCGTTGGTTGCAGGCACAACATGTGTCAAGGGGAGGAGCTGGTGGGTCATTCTTCTCCCCCACAACTTTTTCGTGATTTCAAACTCGCTG
ATGTCATTTCCATCGCCGTTTTCCTTTCTCCTCAATTCATTGTGAGTCCTACTTGGCTTGTCTCACGCTCCTACGGTGTTGTAATGTCTCAGACGTACCTACAACACAGA
TCTATTTACTTACAAATACAACGAGGCCAAGTTAGTTGCGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTTCTCTATTTTTCAGGACTACGAGTAGGAGAAATGGAACGTGATTGTTTGATTGCTTATGGTGCTAGCTTGCTGATTTTTGGATGCTTGATGGTCTCGAGCTA
TCCTTTTGAAGTTCAGGGAGTCGTTGGTTGCAGGCACAACATGTGTCAAGGGGAGGAGCTGGTGGGTCATTCTTCTCCCCCACAACTTTTTCGTGATTTCAAACTCGCTG
ATGTCATTTCCATCGCCGTTTTCCTTTCTCCTCAATTCATTGTGAGTCCTACTTGGCTTGTCTCACGCTCCTACGGTGTTGTAATGTCTCAGACGTACCTACAACACAGA
TCTATTTACTTACAAATACAACGAGGCCAAGTTAGTTGCGAGTGA
Protein sequenceShow/hide protein sequence
MVVLYFSGLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGCRHNMCQGEELVGHSSPPQLFRDFKLADVISIAVFLSPQFIVSPTWLVSRSYGVVMSQTYLQHR
SIYLQIQRGQVSCE