| GenBank top hits | e value | %identity | Alignment |
|---|
| CAN73071.1 hypothetical protein VITISV_032383 [Vitis vinifera] | 1.1e-21 | 49.65 | Show/hide |
Query: NGAWFL---DIGTSLVGSSLPPSTFDSTSIEPFANPMITQVKADIFKTCHPTSLGYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAF
NG W L + T++VGS T + F + + ++KA + + GYTQVPGLDY TFSPVVKATTVR+VLS+A+TNKW LRQLDVKNAF
Subjt: NGAWFL---DIGTSLVGSSLPPSTFDSTSIEPFANPMITQVKADIFKTCHPTSLGYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAF
Query: LNDTLIDHVIWNNLLG-----------ILKKALYELKQDPR
LN TL +HV G +LKKALY LKQ PR
Subjt: LNDTLIDHVIWNNLLG-----------ILKKALYELKQDPR
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| RVW43615.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 4.3e-21 | 49.65 | Show/hide |
Query: NGAWFL---DIGTSLVGSSLPPSTFDSTSIEPFANPMITQVKADIFKTCHPTSLGYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAF
NG W L + T++VGS T + + + ++KA + + GYTQVPGLDY TFSPVVKATTVR+VLS+AITNKW LRQLDVKNAF
Subjt: NGAWFL---DIGTSLVGSSLPPSTFDSTSIEPFANPMITQVKADIFKTCHPTSLGYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAF
Query: LNDTLIDHVIWNNLLG-----------ILKKALYELKQDPR
LN TL +HV G +LKKALY LKQ PR
Subjt: LNDTLIDHVIWNNLLG-----------ILKKALYELKQDPR
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| RVW73295.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 1.7e-22 | 39.41 | Show/hide |
Query: LDIGTSLVGSSLPPSTFDSTSIEPFA--------NPMITQVKADIFKTCHPTSL----------------------------------------------
+ + TSL GSSLPP SIE A +PMIT+ KA IFKT HP +L
Subjt: LDIGTSLVGSSLPPSTFDSTSIEPFA--------NPMITQVKADIFKTCHPTSL----------------------------------------------
Query: ---------------------------------------GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLL
GYTQVPGLDY TFSPVVKATTVR+VLS+A+TNKW LRQLDVKNAFLNDTL++ IWNNLL
Subjt: ---------------------------------------GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLL
Query: GIL
GIL
Subjt: GIL
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| RVW76295.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 8.6e-22 | 45.03 | Show/hide |
Query: FLDIGTSLVGSSLPPSTFDSTSIEPF--------ANPMITQVKADIFKTCHPTSLGYTQ-----------------------------VPGLDYIGTFSP
FL + TSL GS LPP SIE ++PMIT+ KA IFK HP +LG VPGLDY TFS
Subjt: FLDIGTSLVGSSLPPSTFDSTSIEPF--------ANPMITQVKADIFKTCHPTSLGYTQ-----------------------------VPGLDYIGTFSP
Query: VVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLG-----------ILKKALYELKQDPR
VVKATTVR+VL +A+TNKW LRQLDVKN FLN TL +HV G +LKKALY LKQ PR
Subjt: VVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLG-----------ILKKALYELKQDPR
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| RVW87709.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 2.1e-23 | 39.71 | Show/hide |
Query: MTADSSILNQSKNYTSKDSVIVGNGAWFLDIGTSLVG-------------------------------------------SSLPPSTFD---STSIEPFA
MT D S L+++ NYT KD V+V NGA L I T + +S PP D + ++ +
Subjt: MTADSSILNQSKNYTSKDSVIVGNGAWFLDIGTSLVG-------------------------------------------SSLPPSTFD---STSIEPFA
Query: NPMITQVKADIFKTCHPTSL--------------------GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNL
+ M+T+ KA IFKT HP +L GYTQVPGLDY TF+PV+K T VR+VLS+A+TNKW LRQLDVKNAFLN TL ++VIWNNL
Subjt: NPMITQVKADIFKTCHPTSL--------------------GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNL
Query: LGIL
L L
Subjt: LGIL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A438EBA0 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.1e-21 | 48.94 | Show/hide |
Query: NGAWFL---DIGTSLVGSSLPPSTFDSTSIEPFANPMITQVKADIFKTCHPTSLGYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAF
NG W L + T++VGS T + F + + ++KA + + GYTQVPGLDY TFSPVVKATTVR+VLS+A+TNKW LRQLDV NAF
Subjt: NGAWFL---DIGTSLVGSSLPPSTFDSTSIEPFANPMITQVKADIFKTCHPTSLGYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAF
Query: LNDTLIDHVIWNNLLG-----------ILKKALYELKQDPR
LN TL +HV G +LKKALY LKQ PR
Subjt: LNDTLIDHVIWNNLLG-----------ILKKALYELKQDPR
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| A0A438GM61 Retrovirus-related Pol polyprotein from transposon RE1 | 8.4e-23 | 39.41 | Show/hide |
Query: LDIGTSLVGSSLPPSTFDSTSIEPFA--------NPMITQVKADIFKTCHPTSL----------------------------------------------
+ + TSL GSSLPP SIE A +PMIT+ KA IFKT HP +L
Subjt: LDIGTSLVGSSLPPSTFDSTSIEPFA--------NPMITQVKADIFKTCHPTSL----------------------------------------------
Query: ---------------------------------------GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLL
GYTQVPGLDY TFSPVVKATTVR+VLS+A+TNKW LRQLDVKNAFLNDTL++ IWNNLL
Subjt: ---------------------------------------GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLL
Query: GIL
GIL
Subjt: GIL
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| A0A438GVS0 Retrovirus-related Pol polyprotein from transposon RE1 | 4.2e-22 | 45.03 | Show/hide |
Query: FLDIGTSLVGSSLPPSTFDSTSIEPF--------ANPMITQVKADIFKTCHPTSLGYTQ-----------------------------VPGLDYIGTFSP
FL + TSL GS LPP SIE ++PMIT+ KA IFK HP +LG VPGLDY TFS
Subjt: FLDIGTSLVGSSLPPSTFDSTSIEPF--------ANPMITQVKADIFKTCHPTSLGYTQ-----------------------------VPGLDYIGTFSP
Query: VVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLG-----------ILKKALYELKQDPR
VVKATTVR+VL +A+TNKW LRQLDVKN FLN TL +HV G +LKKALY LKQ PR
Subjt: VVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLG-----------ILKKALYELKQDPR
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| A0A438HTE5 Retrovirus-related Pol polyprotein from transposon RE1 | 9.9e-24 | 39.71 | Show/hide |
Query: MTADSSILNQSKNYTSKDSVIVGNGAWFLDIGTSLVG-------------------------------------------SSLPPSTFD---STSIEPFA
MT D S L+++ NYT KD V+V NGA L I T + +S PP D + ++ +
Subjt: MTADSSILNQSKNYTSKDSVIVGNGAWFLDIGTSLVG-------------------------------------------SSLPPSTFD---STSIEPFA
Query: NPMITQVKADIFKTCHPTSL--------------------GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNL
+ M+T+ KA IFKT HP +L GYTQVPGLDY TF+PV+K T VR+VLS+A+TNKW LRQLDVKNAFLN TL ++VIWNNL
Subjt: NPMITQVKADIFKTCHPTSL--------------------GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNL
Query: LGIL
L L
Subjt: LGIL
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| A5C5R8 Integrase catalytic domain-containing protein | 5.5e-22 | 49.65 | Show/hide |
Query: NGAWFL---DIGTSLVGSSLPPSTFDSTSIEPFANPMITQVKADIFKTCHPTSLGYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAF
NG W L + T++VGS T + F + + ++KA + + GYTQVPGLDY TFSPVVKATTVR+VLS+A+TNKW LRQLDVKNAF
Subjt: NGAWFL---DIGTSLVGSSLPPSTFDSTSIEPFANPMITQVKADIFKTCHPTSLGYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAF
Query: LNDTLIDHVIWNNLLG-----------ILKKALYELKQDPR
LN TL +HV G +LKKALY LKQ PR
Subjt: LNDTLIDHVIWNNLLG-----------ILKKALYELKQDPR
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 3.7e-07 | 38.82 | Show/hide |
Query: GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLGI---------LKKALYELKQDPR
G+TQ +DY TF+PV + ++ R +LS+ I + Q+DVK AFLN TL + + GI L KA+Y LKQ R
Subjt: GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLGI---------LKKALYELKQDPR
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.3e-07 | 39.08 | Show/hide |
Query: GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLGI-----------LKKALYELKQDPR
G+ Q G+D+ FSPVVK T++R +LS+A + + QLDVK AFL+ L + + G L K+LY LKQ PR
Subjt: GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLGI-----------LKKALYELKQDPR
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 5.6e-16 | 51.72 | Show/hide |
Query: GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWN-----------NLLGILKKALYELKQDPR
GY Q PGLDY TFSPV+K+T++RIVL +A+ W +RQLDV NAFL TL D V + N + L+KALY LKQ PR
Subjt: GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWN-----------NLLGILKKALYELKQDPR
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 7.3e-16 | 50.57 | Show/hide |
Query: GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLGI-----------LKKALYELKQDPR
GY Q PGLDY TFSPV+K+T++RIVL +A+ W +RQLDV NAFL TL D V + G L+KA+Y LKQ PR
Subjt: GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLGI-----------LKKALYELKQDPR
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