; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh14G011410 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G011410
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCCHC-type domain-containing protein
Genome locationCmo_Chr14:8280110..8282110
RNA-Seq ExpressionCmoCh14G011410
SyntenyCmoCh14G011410
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022930125.1 uncharacterized protein LOC111436618 [Cucurbita moschata]1.7e-12193.28Show/hide
Query:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK
        MNLKCPTLGDF+WYKDMYFSKVLIRTDSSLEFWKENFVNG+PKH SRRIKDGLKTKYNGTIPWQTLSYGSIAS IIEEGLRLCNESKIQNKLNSSISNRK
Subjt:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK

Query:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL
        ELGRFCDQYGCKGIEAPSTSRRKKVKTHPK Y+SYRPRE Y NKPVQSQKP YSRRKYIPTKT+RGKKKQT FKC EEGHY NKC IRGKINELDIDQEL
Subjt:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL

Query:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESE
        KNQLLRLTL DSEQSSEGEILELQ+ESDSYSSTEYESE
Subjt:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESE

XP_022933039.1 uncharacterized protein LOC111439730 [Cucurbita moschata]3.0e-15092.31Show/hide
Query:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK
        MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNG+PKH SRRIKDGLKTK+NGTIPWQTLSYGSIASFIIEEGLRL NESKIQNKLNSSISNRK
Subjt:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK

Query:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL
        ELGRFCDQYGCKGIEAPSTS R KVKTHPK Y+SYRPRE YRNKPVQSQKP YSRRKYIPTKT+ GKKKQTCFKC EEGHYANKC IRGKINELDIDQEL
Subjt:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL

Query:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCEGCINVLTKDQEILLEVLEQVQDLEVQQKIAQRLRDAMKISKPLEREERNPYRL
        KNQLL LTL DSEQSSEGEILELQEESDSYSSTEYESEQEGK TCEGCINVLTKDQEILLEV+E+VQD E+QQKIAQRLRDAM ISKP EREERNPYRL
Subjt:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCEGCINVLTKDQEILLEVLEQVQDLEVQQKIAQRLRDAMKISKPLEREERNPYRL

XP_023520850.1 uncharacterized protein LOC111784362 [Cucurbita pepo subsp. pepo]1.9e-13690.81Show/hide
Query:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK
        MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNG+PKH SRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK
Subjt:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK

Query:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL
        ELGRFCDQYGCKGIEAP TSR+KKVKTHPK Y+SYRPRE YR+KPVQSQKPTYSRRKYIPTKT+RGKKKQTCFKC  EGHYA KC I+GKINELDIDQEL
Subjt:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL

Query:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCEGCINVLTKDQEILLEVLEQVQDLEVQ
        KNQLLRLTL +SEQS EGEIL+LQEESDS SST+YESEQEGK TCEGCINVLTKDQEILLEV+E+VQD E+Q
Subjt:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCEGCINVLTKDQEILLEVLEQVQDLEVQ

XP_023522280.1 uncharacterized protein LOC111786173, partial [Cucurbita pepo subsp. pepo]3.7e-12493.85Show/hide
Query:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK
        MNLKCPTLGDFRWYK MY SKVLIRTDSSLEFWKENFVNG+PKH SRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKL SSISNRK
Subjt:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK

Query:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL
        ELGRFCDQYGCKGIEAPSTSRRKKVKTHPK YNSYRPREKYRNKPVQSQKPTYSRRKY PTKT+RGKKKQTCFKC EEGHYAN+C IRGKINELDIDQEL
Subjt:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL

Query:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGT
        KNQLLRL L DSEQSSEGEILELQEESDSYSSTEYES QEGK T
Subjt:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGT

XP_023552915.1 uncharacterized protein LOC111810441 [Cucurbita pepo subsp. pepo]1.1e-12384.81Show/hide
Query:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK
        MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVN +PKH SRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSS+SNRK
Subjt:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK

Query:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL
        ELGRFCDQYGCKGIEAPSTSRRKK KTHPK Y+SYRPRE YRNKPVQSQKPTYSRRKY PTK ++GKK+QTCFKC EEGHYANKC IRGKINEL+IDQEL
Subjt:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL

Query:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCEGCINVLTKDQEILLEVLEQVQDLE
        KNQLLRL L DSEQSS+GEILELQEESDSYS+TEYESEQEGK T +GC N   +      + + +V  LE
Subjt:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCEGCINVLTKDQEILLEVLEQVQDLE

TrEMBL top hitse value%identityAlignment
A0A6J1EW44 uncharacterized protein LOC1114366188.2e-12293.28Show/hide
Query:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK
        MNLKCPTLGDF+WYKDMYFSKVLIRTDSSLEFWKENFVNG+PKH SRRIKDGLKTKYNGTIPWQTLSYGSIAS IIEEGLRLCNESKIQNKLNSSISNRK
Subjt:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK

Query:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL
        ELGRFCDQYGCKGIEAPSTSRRKKVKTHPK Y+SYRPRE Y NKPVQSQKP YSRRKYIPTKT+RGKKKQT FKC EEGHY NKC IRGKINELDIDQEL
Subjt:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL

Query:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESE
        KNQLLRLTL DSEQSSEGEILELQ+ESDSYSSTEYESE
Subjt:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESE

A0A6J1EWB4 uncharacterized protein LOC1114367164.0e-10090.1Show/hide
Query:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK
        MNLKCPTLGDFRWYKD+YFSKVLIRTDSSLEFWKENFVNG+PKH SRRIKDGLKTKYNGTI WQTLSY SIASFIIEEGLRLCNESKIQNKLNSSISNRK
Subjt:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK

Query:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL
        ELGRFCDQYGCK IEAPSTSRRKKVKTHPK Y+SYRPRE YRNKPVQSQKPTYSRR+Y PTK ++GKK++TCFKC EEGHYANKC IRGKINELDI  EL
Subjt:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL

Query:  KN
        KN
Subjt:  KN

A0A6J1EYM2 uncharacterized protein LOC1114397301.4e-15092.31Show/hide
Query:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK
        MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNG+PKH SRRIKDGLKTK+NGTIPWQTLSYGSIASFIIEEGLRL NESKIQNKLNSSISNRK
Subjt:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK

Query:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL
        ELGRFCDQYGCKGIEAPSTS R KVKTHPK Y+SYRPRE YRNKPVQSQKP YSRRKYIPTKT+ GKKKQTCFKC EEGHYANKC IRGKINELDIDQEL
Subjt:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL

Query:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCEGCINVLTKDQEILLEVLEQVQDLEVQQKIAQRLRDAMKISKPLEREERNPYRL
        KNQLL LTL DSEQSSEGEILELQEESDSYSSTEYESEQEGK TCEGCINVLTKDQEILLEV+E+VQD E+QQKIAQRLRDAM ISKP EREERNPYRL
Subjt:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCEGCINVLTKDQEILLEVLEQVQDLEVQQKIAQRLRDAMKISKPLEREERNPYRL

A0A6J1EZI3 uncharacterized protein LOC1114406582.3e-8772.02Show/hide
Query:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK
        MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNG+PKH SRRIKDGLKTK                                           K
Subjt:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK

Query:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL
        ELGRFCDQYGCKGIEAPSTSRRKKVKTHPK Y+SYRPRE YR+KPVQSQKPTYSRRKYIPTKT+RGKKKQTCFKC EEGHYANKC IRGKINELDIDQEL
Subjt:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL

Query:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKG
        KNQLLRLTL DSEQSS+GEIL+LQEESD   +      ++ KG
Subjt:  KNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKG

A0A6J1IFV1 uncharacterized protein LOC1114729522.4e-9785.37Show/hide
Query:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK
        MNLKCPTLG FRWYKDMYF+KVLIRT+SSLEFWKENFVNG+PK+ SRRIKDGLKTKYNGTIPWQT SY SI SFII EGLRLCNESKIQNKL+SSIS++K
Subjt:  MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRK

Query:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL
        ELGRFCDQYGCKGI+APSTSRRKKVKT+ K YNSYRPREKYR+KP+QSQKPTYS+++Y PTKT+RGKK+Q CFKC EEGHYANKC I+GKINELDIDQEL
Subjt:  ELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQEL

Query:  KNQLL
        K+QLL
Subjt:  KNQLL

SwissProt top hitse value%identityAlignment
P03542 Capsid protein1.2e-0832.11Show/hide
Query:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRN-KPVQSQKPTYSRR
        NGT      S G  A  + EE  ++C+ SK Q KL         +G    +YGCK   +     +K+ K   K+Y  Y+ ++K+R+ K  + ++   S++
Subjt:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRN-KPVQSQKPTYSRR

Query:  KYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQELKNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCE
        KY P    +GKK   C+ C+ EGHYAN+C  R    +  I Q+ +   L+      E   E  ILE +EE +  +STE   E +G  T E
Subjt:  KYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQELKNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCE

P03543 Capsid protein9.1e-0932.97Show/hide
Query:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRP---REKYRN-KPVQSQKPTY
        NGT      S G  A  + EE  ++C+ SK Q KL         +G    +YG K      TS++K  K + K Y  Y+P   ++K+R+ K  + ++   
Subjt:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRP---REKYRN-KPVQSQKPTY

Query:  SRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQELKNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESE
        S+RKY P    +GKK   C+ C+ EGHYAN+C  R    +  I Q+ +N  L+      E   E  ILE +EE +  S+ E + E
Subjt:  SRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQELKNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESE

P03544 Capsid protein6.9e-0932.64Show/hide
Query:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRP---REKYRN-KPVQSQKPTY
        NGT      S G  A  + EE  ++C+ +K Q KL         +G    +YGCK      TS++K  K + K Y +Y+P   ++K+R+ K  + ++   
Subjt:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRP---REKYRN-KPVQSQKPTY

Query:  SRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQELKNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCE
        S++KY P    +GKK   C+ C+ EGHYAN+C  R    +  I Q+ +   L+      E   E  ILE +EE +  +STE   E +G  T E
Subjt:  SRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQELKNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCE

Q00956 Capsid protein6.1e-0529.59Show/hide
Query:  RLCNESKIQNKLNSSISNRKELGRF----CD------QYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRN-KPVQSQKPTYSRRKYIPTKTNRGKKK
        ++C E    +K+     N K+L +F    C       +YGCK   +     +K+ K   K+Y  Y+ ++K+R+ K  + ++   S++KY P    +GKK 
Subjt:  RLCNESKIQNKLNSSISNRKELGRF----CD------QYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRN-KPVQSQKPTYSRRKYIPTKTNRGKKK

Query:  QTCFKCHEEGHYANKCSIRGKINELDIDQELKNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESE
          C+ C+ EGHYAN+C  R    +  I Q+ +   L+      E   E  ILE +EE +  S+ E + E
Subjt:  QTCFKCHEEGHYANKCSIRGKINELDIDQELKNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESE

Q02951 Capsid protein2.5e-0631.58Show/hide
Query:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRN-KPVQSQKPTYSRR
        NGT      S G  A  + EE  ++C  SK Q KL         +G    +YGCK   +      K+ K   K Y  Y+ ++K+R+ K  + ++   S++
Subjt:  NGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRFCDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRN-KPVQSQKPTYSRR

Query:  KYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQELKNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCE
        KY P    +GKK   C+  + EGHYAN+C  R    +  I Q+ +   L+      E   E  ILE +EE +  +STE   E +G  T E
Subjt:  KYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQELKNQLLRLTLIDSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCTGAAATGCCCTACCTTAGGTGATTTCAGGTGGTACAAAGACATGTACTTCAGCAAAGTTCTTATTAGAACAGATAGTTCGTTGGAATTCTGGAAAGAG
AATTTTGTCAATGGAGTACCAAAACACTTATCAAGGAGGATCAAAGACGGTCTGAAGACGAAGTATAATGGAACAATTCCATGGCAGACTTTGTCATATGGATCG
ATAGCATCCTTCATCATAGAAGAAGGACTCAGACTTTGTAATGAGTCAAAGATTCAAAACAAGCTAAATTCTTCAATATCAAACAGAAAAGAGCTTGGAAGATTT
TGTGACCAATATGGATGCAAGGGGATAGAAGCTCCCTCAACCTCTAGAAGAAAGAAGGTTAAGACGCATCCAAAATCTTATAATTCATACAGGCCCAGAGAAAAG
TATCGGAATAAACCCGTGCAATCTCAAAAGCCAACGTATTCAAGAAGGAAGTATATTCCTACGAAAACCAATAGAGGAAAGAAAAAGCAAACTTGCTTCAAATGT
CATGAAGAAGGACACTATGCTAACAAGTGTTCGATCAGAGGAAAGATCAATGAGTTGGATATAGATCAAGAGCTGAAAAATCAGCTATTACGACTGACCCTAATC
GACTCAGAGCAATCAAGCGAGGGAGAAATCCTCGAACTCCAAGAAGAATCCGATTCATATTCTAGCACAGAATACGAATCAGAACAGGAGGGAAAAGGGACATGC
GAAGGATGCATAAATGTCCTTACAAAGGATCAAGAAATTCTACTCGAAGTACTAGAACAAGTTCAAGATCTAGAAGTTCAACAGAAAATTGCTCAACGACTTAGA
GATGCCATGAAAATCTCTAAACCACTTGAAAGGGAAGAAAGAAATCCCTACAGACTCCAATCAGTTCTCCAAAGATTTGAAAAACCAAGAGAATTATCTCCTCAA
GATCTACAAAGAGAGATTAATAGTCTCAAACAAGAAGTACAGGCGATAAGATCTGAAACTAGGTCAGAATCTTATATGCTTCGTCAAGAAATTCTCAATCTTCAG
GAAAGGCTGCCCGAACAAAGGGAAACGGCGCAACCGAACCTGGACGAAGAAGATTTTCAAAGTTCCTTCGTTGGAGCCATCACCACTTCTCAATATCAAAAATGG
AAGCAGCACATAGTTGATCTTCCTTATGTCAAAAACTTCGAGGAGAAAAATATTCCTACGAAGGCCCGACCTATTCAAATGAATAGAAAATTACTAACATTCTGC
AAAGCAAAAATCAATGATCTTTTGCAGAAGGGTCTTATTAGACCGTCAAAGAGCCCCTGGTCATCTGCGGCTTTTTACGTCAACAACCAGGCAGAGAAGGAACGA
GGAGTTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCTGAAATGCCCTACCTTAGGTGATTTCAGGTGGTACAAAGACATGTACTTCAGCAAAGTTCTTATTAGAACAGATAGTTCGTTGGAATTCTGGAAAGAG
AATTTTGTCAATGGAGTACCAAAACACTTATCAAGGAGGATCAAAGACGGTCTGAAGACGAAGTATAATGGAACAATTCCATGGCAGACTTTGTCATATGGATCG
ATAGCATCCTTCATCATAGAAGAAGGACTCAGACTTTGTAATGAGTCAAAGATTCAAAACAAGCTAAATTCTTCAATATCAAACAGAAAAGAGCTTGGAAGATTT
TGTGACCAATATGGATGCAAGGGGATAGAAGCTCCCTCAACCTCTAGAAGAAAGAAGGTTAAGACGCATCCAAAATCTTATAATTCATACAGGCCCAGAGAAAAG
TATCGGAATAAACCCGTGCAATCTCAAAAGCCAACGTATTCAAGAAGGAAGTATATTCCTACGAAAACCAATAGAGGAAAGAAAAAGCAAACTTGCTTCAAATGT
CATGAAGAAGGACACTATGCTAACAAGTGTTCGATCAGAGGAAAGATCAATGAGTTGGATATAGATCAAGAGCTGAAAAATCAGCTATTACGACTGACCCTAATC
GACTCAGAGCAATCAAGCGAGGGAGAAATCCTCGAACTCCAAGAAGAATCCGATTCATATTCTAGCACAGAATACGAATCAGAACAGGAGGGAAAAGGGACATGC
GAAGGATGCATAAATGTCCTTACAAAGGATCAAGAAATTCTACTCGAAGTACTAGAACAAGTTCAAGATCTAGAAGTTCAACAGAAAATTGCTCAACGACTTAGA
GATGCCATGAAAATCTCTAAACCACTTGAAAGGGAAGAAAGAAATCCCTACAGACTCCAATCAGTTCTCCAAAGATTTGAAAAACCAAGAGAATTATCTCCTCAA
GATCTACAAAGAGAGATTAATAGTCTCAAACAAGAAGTACAGGCGATAAGATCTGAAACTAGGTCAGAATCTTATATGCTTCGTCAAGAAATTCTCAATCTTCAG
GAAAGGCTGCCCGAACAAAGGGAAACGGCGCAACCGAACCTGGACGAAGAAGATTTTCAAAGTTCCTTCGTTGGAGCCATCACCACTTCTCAATATCAAAAATGG
AAGCAGCACATAGTTGATCTTCCTTATGTCAAAAACTTCGAGGAGAAAAATATTCCTACGAAGGCCCGACCTATTCAAATGAATAGAAAATTACTAACATTCTGC
AAAGCAAAAATCAATGATCTTTTGCAGAAGGGTCTTATTAGACCGTCAAAGAGCCCCTGGTCATCTGCGGCTTTTTACGTCAACAACCAGGCAGAGAAGGAACGA
GGAGTTCTGTGA
Protein sequenceShow/hide protein sequence
MNLKCPTLGDFRWYKDMYFSKVLIRTDSSLEFWKENFVNGVPKHLSRRIKDGLKTKYNGTIPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSISNRKELGRF
CDQYGCKGIEAPSTSRRKKVKTHPKSYNSYRPREKYRNKPVQSQKPTYSRRKYIPTKTNRGKKKQTCFKCHEEGHYANKCSIRGKINELDIDQELKNQLLRLTLI
DSEQSSEGEILELQEESDSYSSTEYESEQEGKGTCEGCINVLTKDQEILLEVLEQVQDLEVQQKIAQRLRDAMKISKPLEREERNPYRLQSVLQRFEKPRELSPQ
DLQREINSLKQEVQAIRSETRSESYMLRQEILNLQERLPEQRETAQPNLDEEDFQSSFVGAITTSQYQKWKQHIVDLPYVKNFEEKNIPTKARPIQMNRKLLTFC
KAKINDLLQKGLIRPSKSPWSSAAFYVNNQAEKERGVL