CuGenDBv2

Gene ID	CmoCh14G011790
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Polyprotein
Genome location	Cmo_Chr14:9730975..9731720
RNA-Seq Expression	CmoCh14G011790
Synteny	CmoCh14G011790
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AGW47867.1 polyprotein [Phaseolus vulgaris]

6.5e-49

57.66

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Query:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK
        MKALLGSQ +WEVV++GFEEP +TTGY AAQ+KALKE+RSKDKA LYML+RA+DE+ FEKI  A+TSKE WDIL KVFK AD+VKQVRLQTL  ELE+MK
Subjt:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK

Query:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQAL----PIKDEKV
        M ES+                                               +ESKDLAT  VDELAGSLE  EQR KKKKEETL+QAL     IKDEKV
Subjt:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQAL----PIKDEKV

Query:  LYSQNFQGRGRDHGSRGRSDQG
        LY QN Q RGR  GSRG    G
Subjt:  LYSQNFQGRGRDHGSRGRSDQG

KAE8702390.1 hypothetical protein F3Y22_tig00110483pilonHSYRG00411 [Hibiscus syriacus]

7.6e-50

57.59

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Query:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK
        MKALLGSQ AWEVV++GFEEP  TTGY  AQ+KALKE RSKDKA LYMLFRA+DESGFEKI  A TSKE WDILGKVFK A++VKQVRLQTL  ELES+K
Subjt:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK

Query:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQALP----IKDEKV
        +KE +                                               +ESKDLAT  V+EL GSLE  EQR KKKKEETL+QAL     IKDEKV
Subjt:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQALP----IKDEKV

Query:  LYSQNFQGRGRDHGSR--GRSDQG
         YSQNF+G+GR  G R  GR  QG
Subjt:  LYSQNFQGRGRDHGSR--GRSDQG

KAE8705809.1 hypothetical protein F3Y22_tig00110418pilonHSYRG00346 [Hibiscus syriacus]

9.0e-51

58.48

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Query:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK
        MKALLGSQ AWEVV++GF+EP  TTGY AAQ+KALKE RSKDKA LYMLFRA+DESGFEKI  A TSKE WDILGKVFK AD+VKQVRLQTL  ELES+K
Subjt:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK

Query:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQALP----IKDEKV
        MKE +                                               +ESKDLAT  V+EL GSLE  EQR KKKKEETL+QAL     IKDEKV
Subjt:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQALP----IKDEKV

Query:  LYSQNFQGRGRDHGSR--GRSDQG
         YSQNF+G+GR  G R  GR  QG
Subjt:  LYSQNFQGRGRDHGSR--GRSDQG

KAE8721174.1 hypothetical protein F3Y22_tig00016637pilonHSYRG00095 [Hibiscus syriacus]

3.1e-51

58.93

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Query:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK
        MKALLGSQ AWEVV++GFEEP  TTGY AAQ+KALKE RSKDKA LYMLFRA+DESGFEKI  A TSKE WDILGKVFK AD+VKQVRLQTL  ELES+K
Subjt:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK

Query:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQALP----IKDEKV
        MKE +                                               +ESKDLAT  V+EL GSLE  EQR KKKKEETL+QAL     IKDEKV
Subjt:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQALP----IKDEKV

Query:  LYSQNFQGRGRDHGSR--GRSDQG
         YSQNF+G+GR  G R  GR  QG
Subjt:  LYSQNFQGRGRDHGSR--GRSDQG

KAE8732752.1 hypothetical protein F3Y22_tig00001732pilonHSYRG00018 [Hibiscus syriacus]

4.0e-51

58.48

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Query:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK
        MKALLGSQ AWEVV++GFEEP  TTGY AAQ+KALKE RSKDKA LYMLFRA+DESGFEKI  A TSKE WDILGKVFK AD+VKQVRLQTL  ELES+K
Subjt:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK

Query:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQRKKK-KEETLDQALP----IKDEKV
        MKE +                                               +ESKDLAT  ++EL GSLE  EQRKKK KEETL+QAL     IKDEKV
Subjt:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQRKKK-KEETLDQALP----IKDEKV

Query:  LYSQNFQGRGRDHGSR--GRSDQG
         YSQNF+G+GR  G R  GR  QG
Subjt:  LYSQNFQGRGRDHGSR--GRSDQG

TrEMBL top hits

e value

%identity

Alignment

A0A059QBK0 Polyprotein

3.1e-49

57.66

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Query:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK
        MKALLGSQ +WEVV++GFEEP +TTGY AAQ+KALKE+RSKDKA LYML+RA+DE+ FEKI  A+TSKE WDIL KVFK AD+VKQVRLQTL  ELE+MK
Subjt:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK

Query:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQAL----PIKDEKV
        M ES+                                               +ESKDLAT  VDELAGSLE  EQR KKKKEETL+QAL     IKDEKV
Subjt:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQAL----PIKDEKV

Query:  LYSQNFQGRGRDHGSRGRSDQG
        LY QN Q RGR  GSRG    G
Subjt:  LYSQNFQGRGRDHGSRGRSDQG

A0A6A3AD07 Uncharacterized protein

3.7e-50

57.59

Show/hide

Query:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK
        MKALLGSQ AWEVV++GFEEP  TTGY  AQ+KALKE RSKDKA LYMLFRA+DESGFEKI  A TSKE WDILGKVFK A++VKQVRLQTL  ELES+K
Subjt:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK

Query:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQALP----IKDEKV
        +KE +                                               +ESKDLAT  V+EL GSLE  EQR KKKKEETL+QAL     IKDEKV
Subjt:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQALP----IKDEKV

Query:  LYSQNFQGRGRDHGSR--GRSDQG
         YSQNF+G+GR  G R  GR  QG
Subjt:  LYSQNFQGRGRDHGSR--GRSDQG

A0A6A3ASE2 Uncharacterized protein

4.4e-51

58.48

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Query:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK
        MKALLGSQ AWEVV++GF+EP  TTGY AAQ+KALKE RSKDKA LYMLFRA+DESGFEKI  A TSKE WDILGKVFK AD+VKQVRLQTL  ELES+K
Subjt:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK

Query:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQALP----IKDEKV
        MKE +                                               +ESKDLAT  V+EL GSLE  EQR KKKKEETL+QAL     IKDEKV
Subjt:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQALP----IKDEKV

Query:  LYSQNFQGRGRDHGSR--GRSDQG
         YSQNF+G+GR  G R  GR  QG
Subjt:  LYSQNFQGRGRDHGSR--GRSDQG

A0A6A3BX58 Uncharacterized protein

1.5e-51

58.93

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Query:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK
        MKALLGSQ AWEVV++GFEEP  TTGY AAQ+KALKE RSKDKA LYMLFRA+DESGFEKI  A TSKE WDILGKVFK AD+VKQVRLQTL  ELES+K
Subjt:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK

Query:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQALP----IKDEKV
        MKE +                                               +ESKDLAT  V+EL GSLE  EQR KKKKEETL+QAL     IKDEKV
Subjt:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQR-KKKKEETLDQALP----IKDEKV

Query:  LYSQNFQGRGRDHGSR--GRSDQG
         YSQNF+G+GR  G R  GR  QG
Subjt:  LYSQNFQGRGRDHGSR--GRSDQG

A0A6A3CZT6 Uncharacterized protein

2.0e-51

58.48

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Query:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK
        MKALLGSQ AWEVV++GFEEP  TTGY AAQ+KALKE RSKDKA LYMLFRA+DESGFEKI  A TSKE WDILGKVFK AD+VKQVRLQTL  ELES+K
Subjt:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMK

Query:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQRKKK-KEETLDQALP----IKDEKV
        MKE +                                               +ESKDLAT  ++EL GSLE  EQRKKK KEETL+QAL     IKDEKV
Subjt:  MKESK-----------------------------------------------KESKDLATFMVDELAGSLETQEQRKKK-KEETLDQALP----IKDEKV

Query:  LYSQNFQGRGRDHGSR--GRSDQG
         YSQNF+G+GR  G R  GR  QG
Subjt:  LYSQNFQGRGRDHGSR--GRSDQG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

1.3e-10

39.13

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Query:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKE
        MKA+LG+   WE+V+KGF EP++       Q   L++ R +DK  L ++++ +DE  FEK+  AT++K+
Subjt:  MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKE

AT3G21000.1 Gag-Pol-related retrotransposon family protein

5.5e-06

32.28

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Query:  KALLGSQHAWEVVKKGFEEPKDTTGYMAA--QSKALKEVRS---KDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEAD--QVKQVRLQTLHC
        K+ L  Q  W+VV  G  +       +AA  Q + L + R    KD   L +L  ++ +S F K  SA+++K+VWD+L K  ++A   +++QV ++ L  
Subjt:  KALLGSQHAWEVVKKGFEEPKDTTGYMAA--QSKALKEVRS---KDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEAD--QVKQVRLQTLHC

Query:  ELESMKM--KESKKESKDLATFMVDEL
        +LE +KM  KES     D A  +++ L
Subjt:  ELESMKM--KESKKESKDLATFMVDEL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAAGCTCTTCTCGGTTCTCAACATGCATGGGAGGTGGTCAAAAAAGGTTTCGAAGAACCAAAAGATACCACGGGTTATATGGCGGCACAAAGCAAGGCGTTGAAAGA
GGTGCGATCAAAGGATAAGGCGACACTATACATGTTGTTCCGAGCCATTGACGAGTCAGGCTTTGAGAAGATTACCAGTGCAACTACTTCAAAAGAAGTGTGGGACATTT
TAGGAAAAGTGTTCAAAGAGGCCGACCAAGTCAAGCAAGTGCGTCTCCAAACTCTTCATTGCGAGTTGGAGAGCATGAAGATGAAGGAGTCAAAAAAAGAGTCAAAGGAC
CTAGCGACGTTCATGGTCGATGAGCTTGCCGGTTCTCTCGAGACACAAGAGCAACGTAAGAAAAAGAAGGAGGAAACACTCGATCAAGCACTTCCAATCAAAGATGAAAA
GGTACTCTATTCTCAAAATTTTCAAGGTAGAGGTCGTGATCATGGAAGTCGTGGTCGCAGTGATCAAGGCAGCTGTGTCATGAAGGATTTTATAAGGAGAAGGGACAGTC
GAGCCAAGCAAATTGGCGTGGAAGAGGACGCGGTCGAGGAAGAGGCGGCCAATTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MKALLGSQHAWEVVKKGFEEPKDTTGYMAAQSKALKEVRSKDKATLYMLFRAIDESGFEKITSATTSKEVWDILGKVFKEADQVKQVRLQTLHCELESMKMKESKKESKD
LATFMVDELAGSLETQEQRKKKKEETLDQALPIKDEKVLYSQNFQGRGRDHGSRGRSDQGSCVMKDFIRRRDSRAKQIGVEEDAVEEEAAN

CmoCh14G011790 (gene) of Cucurbita moschata (Rifu) v1 genome