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CmoCh14G013550 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G013550
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionAuxin-responsive protein
Genome locationCmo_Chr14:11241243..11241485
RNA-Seq ExpressionCmoCh14G013550
SyntenyCmoCh14G013550
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR003311 - AUX/IAA protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581907.1 Auxin-induced protein IAA6, partial [Cucurbita argyrosperma subsp. sororia]3.6e-3593.75Show/hide
Query:  MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGLNFIANNDDFGI
        MAA+GL LEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQ  SKQAVGW PVCSYRRRNGLNFIANNDDFGI
Subjt:  MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGLNFIANNDDFGI

KAG7018340.1 Auxin-induced protein 22A, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-3593.75Show/hide
Query:  MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGLNFIANNDDFGI
        MAA+GL LEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQ  SKQAVGW PVCSYRRRNGLNFIANNDDFGI
Subjt:  MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGLNFIANNDDFGI

XP_008447487.1 PREDICTED: auxin-induced protein AUX22-like [Cucumis melo]4.1e-1566.67Show/hide
Query:  MAAQGLDLEITQLRLGLPG--GGPIPASKNNDNKRVFLEVEVEDH---KSHGQGRSKQAVGWRPVCSYRRRN
        MAA+GLDLEIT+LRLGLPG  G  I  SKNN+ KRVF EVEVED    K   +GR KQ VGW PVCSYR+R+
Subjt:  MAAQGLDLEITQLRLGLPG--GGPIPASKNNDNKRVFLEVEVEDH---KSHGQGRSKQAVGWRPVCSYRRRN

XP_022949217.1 auxin-induced protein AUX22-like isoform X1 [Cucurbita moschata]7.1e-1572.46Show/hide
Query:  MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGL
        MA +GL LEIT+LRL     GPIPASKNN+ KRVF EVEVED KS G GR KQ VGW PVCSYRRRN L
Subjt:  MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGL

XP_038903795.1 auxin-induced protein AUX22-like [Benincasa hispida]2.9e-1672.22Show/hide
Query:  MAAQGLDLEITQLRLGLPGGGP-IPASKNNDNKRVFLEVEVEDHKSHG----QGRSKQAVGWRPVCSYRRRN
        M A GL LEIT+LRLGLPGGG  I ASKNN+ KRVF EVEVED KSHG    +GR KQ VGW PVCSYR+RN
Subjt:  MAAQGLDLEITQLRLGLPGGGP-IPASKNNDNKRVFLEVEVEDHKSHG----QGRSKQAVGWRPVCSYRRRN

TrEMBL top hitse value%identityAlignment
A0A1S3BHJ0 Auxin-responsive protein2.0e-1566.67Show/hide
Query:  MAAQGLDLEITQLRLGLPG--GGPIPASKNNDNKRVFLEVEVEDH---KSHGQGRSKQAVGWRPVCSYRRRN
        MAA+GLDLEIT+LRLGLPG  G  I  SKNN+ KRVF EVEVED    K   +GR KQ VGW PVCSYR+R+
Subjt:  MAAQGLDLEITQLRLGLPG--GGPIPASKNNDNKRVFLEVEVEDH---KSHGQGRSKQAVGWRPVCSYRRRN

A0A5D3DA37 Auxin-responsive protein2.0e-1566.67Show/hide
Query:  MAAQGLDLEITQLRLGLPG--GGPIPASKNNDNKRVFLEVEVEDH---KSHGQGRSKQAVGWRPVCSYRRRN
        MAA+GLDLEIT+LRLGLPG  G  I  SKNN+ KRVF EVEVED    K   +GR KQ VGW PVCSYR+R+
Subjt:  MAAQGLDLEITQLRLGLPG--GGPIPASKNNDNKRVFLEVEVEDH---KSHGQGRSKQAVGWRPVCSYRRRN

A0A6J1KCT2 Auxin-responsive protein3.4e-1572.46Show/hide
Query:  MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGL
        MA +GL LEIT+LRL     GPIPASKNN+ KRVF EVEVED KS G GR KQ VGW PVCSYRRRN L
Subjt:  MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGL

A0A6J1KF83 Auxin-responsive protein3.4e-1572.46Show/hide
Query:  MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGL
        MA +GL LEIT+LRL     GPIPASKNN+ KRVF EVEVED KS G GR KQ VGW PVCSYRRRN L
Subjt:  MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGL

Q9SSY3 Auxin-responsive protein3.4e-1566.67Show/hide
Query:  MAAQGLDLEITQLRLGLPGG--GPIPASKNNDNKRVFLEVEVED---HKSHGQGRSKQAVGWRPVCSYRRRN
        +AA+GLDLEIT+LRLGLPG     I  SKNN+ KRVF EVEVED    K   +GR KQ VGW PVCSYRRRN
Subjt:  MAAQGLDLEITQLRLGLPGG--GPIPASKNNDNKRVFLEVEVED---HKSHGQGRSKQAVGWRPVCSYRRRN

SwissProt top hitse value%identityAlignment
O24541 Auxin-induced protein 22C2.9e-1147.37Show/hide
Query:  MAAQGLDLEITQLRLGLPGGG---PIPASKNNDNKRVFLEVEVEDHKSHGQGRSK---QAVGWRPVCSYRRRNGLN
        M  + L LEIT+LRLGLPG G        KN + KRVF ++E E+  S   G+ +   Q VGW PVCSYR++N +N
Subjt:  MAAQGLDLEITQLRLGLPGGG---PIPASKNNDNKRVFLEVEVEDHKSHGQGRSK---QAVGWRPVCSYRRRNGLN

P13088 Auxin-induced protein AUX221.6e-0944.44Show/hide
Query:  MAAQGLDLEITQLRLGLPGG--GPIPASKNNDNKRVFLEVE---VEDHKSHGQGRSK------QAVGWRPVCSYRRRNGLN
        MA +GL LEIT+LRLGLP         +K N+ KR F E++    +++ S G G  K      Q VGW PVCSYR++N +N
Subjt:  MAAQGLDLEITQLRLGLPGG--GPIPASKNNDNKRVFLEVE---VEDHKSHGQGRSK------QAVGWRPVCSYRRRNGLN

P32293 Auxin-induced protein 22A2.4e-1049.38Show/hide
Query:  MAAQGLDLEITQLRLGLPGGGPIP-ASKNND--NKRVFLEVE---VEDHKSHGQGRSK-----QAVGWRPVCSYRRRNGLN
        MA +GL LEIT+LRLGLP    +  A+KN +  NKRVF E++    E+  S G G  K     Q VGW PVCSYR++N +N
Subjt:  MAAQGLDLEITQLRLGLPGGGPIP-ASKNND--NKRVFLEVE---VEDHKSHGQGRSK-----QAVGWRPVCSYRRRNGLN

P33078 Auxin-responsive protein IAA55.1e-0847.76Show/hide
Query:  AQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGL
        +  L LEIT+LRLGLPG   +     +  KR   EVE+ D K     +  Q VGW PVCSYRR+N L
Subjt:  AQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGL

P49680 Auxin-induced protein IAA67.1e-1049.32Show/hide
Query:  MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVE--VEDHKSHGQGRS----KQAVGWRPVCSYRRRN
        MA +GL LEIT+LRLGL  G P    K N+ KR+F E++  VE++   G  +S     Q VGW PVCSYR++N
Subjt:  MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVE--VEDHKSHGQGRS----KQAVGWRPVCSYRRRN

Arabidopsis top hitse value%identityAlignment
AT1G15580.1 indole-3-acetic acid inducible 53.6e-0947.76Show/hide
Query:  AQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGL
        +  L LEIT+LRLGLPG   +     +  KR   EVE+ D K     +  Q VGW PVCSYRR+N L
Subjt:  AQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGL

AT1G52830.1 indole-3-acetic acid 62.9e-0643.37Show/hide
Query:  MAAQGLDLEITQLRLGLPGGGPIPAS---KNNDNKRVF--------LEVEVEDH-KSHGQGRS-----KQAVGWRPVCSYRRR
        MA +GL LEIT+LRLGLPG      S    +   KRV         L+ E E+   S  +  S      QAVGW PVCSYRR+
Subjt:  MAAQGLDLEITQLRLGLPGGGPIPAS---KNNDNKRVF--------LEVEVEDH-KSHGQGRS-----KQAVGWRPVCSYRRR

AT3G15540.1 indole-3-acetic acid inducible 192.9e-0634.48Show/hide
Query:  MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQ--------------------GRSKQAVGWRPVCSYRRRN
        M  +GL LEIT+LRLGLPG      ++    KR F E+ +    S+                          Q VGW PVCSYR++N
Subjt:  MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQ--------------------GRSKQAVGWRPVCSYRRRN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTCAGGGATTAGACCTTGAAATCACCCAGCTCCGGCTAGGACTCCCCGGTGGCGGTCCGATTCCGGCGAGTAAAAACAATGATAACAAAAGGGTTTTCTTGGA
GGTGGAAGTAGAAGATCATAAGAGTCACGGCCAGGGACGGAGCAAGCAGGCAGTAGGGTGGCGGCCCGTGTGCTCATACCGGCGGAGGAACGGCTTGAATTTTATTGCTA
ATAATGATGATTTTGGTATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCTCAGGGATTAGACCTTGAAATCACCCAGCTCCGGCTAGGACTCCCCGGTGGCGGTCCGATTCCGGCGAGTAAAAACAATGATAACAAAAGGGTTTTCTTGGA
GGTGGAAGTAGAAGATCATAAGAGTCACGGCCAGGGACGGAGCAAGCAGGCAGTAGGGTGGCGGCCCGTGTGCTCATACCGGCGGAGGAACGGCTTGAATTTTATTGCTA
ATAATGATGATTTTGGTATCTAA
Protein sequenceShow/hide protein sequence
MAAQGLDLEITQLRLGLPGGGPIPASKNNDNKRVFLEVEVEDHKSHGQGRSKQAVGWRPVCSYRRRNGLNFIANNDDFGI