; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh14G013670 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G013670
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTATA-binding protein-associated factor 2N-like
Genome locationCmo_Chr14:11309135..11310245
RNA-Seq ExpressionCmoCh14G013670
SyntenyCmoCh14G013670
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008454250.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis melo]2.0e-7689.04Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF
        M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GGG  R GSGFG+GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF

Query:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY
        AFA+PAR+ ASAWKSGDWICARSGCNEHNFASRMECFRC+APRDSY
Subjt:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY

XP_022955940.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata]3.1e-85100Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF
        MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF

Query:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY
        AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY
Subjt:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY

XP_022979604.1 ranBP2-type zinc finger protein At1g67325-like [Cucurbita maxima]2.1e-8196.58Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF
        MNRPGDWNCTSCHHLNFQRRDICQRCGDPK GGGG RAGSGFGFGGSDVRPGDWYCS+GNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF

Query:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY
         F TPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY
Subjt:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY

XP_023528279.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo]3.3e-7993.84Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF
        MNRPGDWNCTSCHH NFQRRDICQRCGDPKT G   R GSGFGFGGSDVRPGDWYCSVGNCGAHNFA+RSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF

Query:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY
        AF+TPARSPASAWKSGDWICARSGCNEHNFASRMECFRC+APRDSY
Subjt:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY

XP_038892097.1 zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida]1.5e-7689.04Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF
        M+RPGDWNC SC HLNFQRRD+CQRCGDPK+GGG  R GSGFG+GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISP+
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF

Query:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY
        AFA+PAR+ ASAWKSGDWICARSGCNEHNFASRMECFRC+APRDSY
Subjt:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY

TrEMBL top hitse value%identityAlignment
A0A0A0KTI0 Uncharacterized protein5.4e-7587.67Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF
        M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GGG  R GSGFG+GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PR +PRGISPF
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF

Query:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY
        AF +PAR+ ASAWKSGDWICARSGCNEHNFASRMECFRC+APRDSY
Subjt:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY

A0A1S3BZE4 uncharacterized RNA-binding protein C17H9.04c-like9.8e-7789.04Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF
        M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GGG  R GSGFG+GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF

Query:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY
        AFA+PAR+ ASAWKSGDWICARSGCNEHNFASRMECFRC+APRDSY
Subjt:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY

A0A6J1GA82 periodic tryptophan protein 2 isoform X21.1e-6776.83Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGG----------GGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA----FD
        M+RPGDWNC SC HLNFQRRD+CQRCGDPK+GG          GG R GSGFG+GGSDVRPGDWYCS+GNCGAHNFASRSSCFKCGAFKDDMSA    FD
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGG----------GGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA----FD

Query:  FDLPRPTPRGISPFAFATP----ARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY
        FD+PR   RG+SPF FA P    AR+ ASAWKSGDWICARSGCNEHNFASRMECFRC+AP+DSY
Subjt:  FDLPRPTPRGISPFAFATP----ARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY

A0A6J1GWG9 uncharacterized RNA-binding protein C17H9.04c-like1.5e-85100Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF
        MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF

Query:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY
        AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY
Subjt:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY

A0A6J1IX27 ranBP2-type zinc finger protein At1g67325-like1.0e-8196.58Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF
        MNRPGDWNCTSCHHLNFQRRDICQRCGDPK GGGG RAGSGFGFGGSDVRPGDWYCS+GNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPF

Query:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY
         F TPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY
Subjt:  AFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c4.9e-0931.21Show/hide
Query:  RPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFAF
        RPGDWNC  C   NFQRR  C RC  P  G     A +G      D   G+ Y   GN  +H  A+    +       + +    DL             
Subjt:  RPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFAF

Query:  ATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPR
        ++ +      +++GDW C   GC  HNFA  + C RC A R
Subjt:  ATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPR

O95218 Zinc finger Ran-binding domain-containing protein 25.6e-0532.32Show/hide
Query:  VRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDD----MSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPR
        V  GDW C    CG  NFA R+SC +CG  K      M A   ++ +            T A      + + DW C    C+  N+A R EC  CN P+
Subjt:  VRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDD----MSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPR

Q19QU3 Zinc finger Ran-binding domain-containing protein 25.6e-0532.32Show/hide
Query:  VRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDD----MSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPR
        V  GDW C    CG  NFA R+SC +CG  K      M A   ++ +            T A      + + DW C    C+  N+A R EC  CN P+
Subjt:  VRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDD----MSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPR

Q5R580 Zinc finger Ran-binding domain-containing protein 25.6e-0532.32Show/hide
Query:  VRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDD----MSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPR
        V  GDW C    CG  NFA R+SC +CG  K      M A   ++ +            T A      + + DW C    C+  N+A R EC  CN P+
Subjt:  VRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDD----MSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPR

Q9R020 Zinc finger Ran-binding domain-containing protein 25.6e-0532.32Show/hide
Query:  VRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDD----MSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPR
        V  GDW C    CG  NFA R+SC +CG  K      M A   ++ +            T A      + + DW C    C+  N+A R EC  CN P+
Subjt:  VRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDD----MSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPR

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein6.8e-0632.88Show/hide
Query:  RPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKC
        + GDW C +C+ LNF +   C RC D  T                 + PG+W C   +C   NF   S C KC
Subjt:  RPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKC

AT2G17975.1 zinc finger (Ran-binding) family protein1.6e-0729.63Show/hide
Query:  RPGDWYCSVGNCGAHNFASRSSCFKCG----------AFKDDMSAFDFDLPR---------------PTPRGIS---------PFAFATPARSPA-----
        R GDW C    CG HN++SR  C KC               +  A ++D  R                +  G+S         P  F     +PA     
Subjt:  RPGDWYCSVGNCGAHNFASRSSCFKCG----------AFKDDMSAFDFDLPR---------------PTPRGIS---------PFAFATPARSPA-----

Query:  -SAWKSGDWICARSGCNEHNFASRMECFRCNAPRD
           W+ GDW+C  + C  HN+ASR EC RC   RD
Subjt:  -SAWKSGDWICARSGCNEHNFASRMECFRCNAPRD

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein1.4e-3042.14Show/hide
Query:  GDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFAFAT
        GDW C +C H NF++R+ CQ+CG PK GG      S + +  ++V  GDWYC   NCG+HN+ASR+SC++CG  K + +   +        G    A+  
Subjt:  GDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFAFAT

Query:  PARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRD
           +    WK+GDW+C R GC  HN+ASR ECF+C   RD
Subjt:  PARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRD

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein6.3e-5260.48Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGG----------GARAGSGFGF-GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA-----
        M+RPGDWNC SC HLNFQRRD CQRCGD ++G G          G RA S FGF  GSDVRPGDWYC+VGNCG HNFASRS+CFKCG FKD+  A     
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGG----------GARAGSGFGF-GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA-----

Query:  -------FDFDLPRPTPRGISPFAFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRD
               FD D+ R             P     S+WKSGDWIC R GCNEHNFASRMECFRCNAPRD
Subjt:  -------FDFDLPRPTPRGISPFAFATPARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRD

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein1.2e-4757.06Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGG---------GGARAGSGFGFG-GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFD----
        MNRPGDWNC  C HLNFQRRD CQRC +P+ GG         GG    S FGF  G DVRPGDWYC++G+CG HNFA+RSSCFKCGA KD+ S       
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGG---------GGARAGSGFGFG-GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFD----

Query:  ---FDLPRPTPRGISPFAFATP--ARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRD
            D+     RG+  F  ++     +  S WKSGDWIC RSGCNEHNFASR ECFRCNAP++
Subjt:  ---FDLPRPTPRGISPFAFATP--ARSPASAWKSGDWICARSGCNEHNFASRMECFRCNAPRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAGACCCGGAGACTGGAACTGCACCTCCTGCCACCACTTGAACTTCCAGAGGAGGGACATCTGCCAGCGCTGCGGCGATCCCAAGACCGGCGGCGGCGGCGCAAG
AGCTGGGTCTGGATTCGGGTTCGGCGGGTCGGACGTCAGGCCCGGGGACTGGTACTGCAGCGTAGGCAACTGTGGAGCCCACAATTTCGCAAGCCGGTCAAGCTGCTTCA
AATGTGGGGCCTTCAAAGACGACATGTCGGCCTTCGACTTCGACCTTCCTCGTCCAACTCCTCGCGGAATATCCCCTTTTGCTTTCGCTACTCCCGCCCGTTCCCCTGCC
TCCGCTTGGAAGTCCGGTGACTGGATTTGTGCCAGGTCGGGATGTAACGAACATAACTTTGCAAGTAGGATGGAGTGCTTCAGATGCAATGCTCCAAGAGACTCGTACTA
A
mRNA sequenceShow/hide mRNA sequence
AGCTATTCCATCCCCACTCTTGTGTTTGTTTAAATCAGCCATTTTTGTTGTTCTCAAGACACAGAAGATGAACAGACCCGGAGACTGGAACTGCACCTCCTGCCACCACT
TGAACTTCCAGAGGAGGGACATCTGCCAGCGCTGCGGCGATCCCAAGACCGGCGGCGGCGGCGCAAGAGCTGGGTCTGGATTCGGGTTCGGCGGGTCGGACGTCAGGCCC
GGGGACTGGTACTGCAGCGTAGGCAACTGTGGAGCCCACAATTTCGCAAGCCGGTCAAGCTGCTTCAAATGTGGGGCCTTCAAAGACGACATGTCGGCCTTCGACTTCGA
CCTTCCTCGTCCAACTCCTCGCGGAATATCCCCTTTTGCTTTCGCTACTCCCGCCCGTTCCCCTGCCTCCGCTTGGAAGTCCGGTGACTGGATTTGTGCCAGGTCGGGAT
GTAACGAACATAACTTTGCAAGTAGGATGGAGTGCTTCAGATGCAATGCTCCAAGAGACTCGTACTAACAAAAACTAGCCATGTTCGAGTGCACGGTTTAGGGTTCCAAG
TGAGAAAATTTCAAAGAGACTTCATTCATAAACTGCACTATCTTTGTTTCTTTTTTTGTCTCTTTGATTTTGATTTTGATTTTGTTTTTGTAGCCTTTTTTTTTTGTTGT
TAATTTCTGTGATGAAAATTTGAGATAATCTCCA
Protein sequenceShow/hide protein sequence
MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFAFATPARSPA
SAWKSGDWICARSGCNEHNFASRMECFRCNAPRDSY