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CmoCh14G013840 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G013840
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpalmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like
Genome locationCmo_Chr14:11403558..11407949
RNA-Seq ExpressionCmoCh14G013840
SyntenyCmoCh14G013840
Gene Ontology termsGO:0006629 - lipid metabolic process (biological process)
GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (molecular function)
InterPro domainsIPR015876 - Acyl-CoA desaturase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581935.1 Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]8.9e-4067.41Show/hide
Query:  LFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHA----------------------------------------LQKRNQSVSEMIPRHRKWENVTDLEK
        LFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHA                                        LQKR+QSVSEMIPR RKWENVTDL+K
Subjt:  LFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHA----------------------------------------LQKRNQSVSEMIPRHRKWENVTDLEK

Query:  QTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
        QTFYRFLHKTYLLHPI LAAILYSIGGAPFFIWGM
Subjt:  QTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM

XP_022955960.1 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucurbita moschata]5.6e-3457.78Show/hide
Query:  LFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ----------------------------------------KRNQSVSEMIPRHRKWENVTDLEK
        LFG+TISYHRNLTHK+F LPKWLEYL AYCG+H+ Q                                        KR++SV+EMIPR RKWEN TDLEK
Subjt:  LFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ----------------------------------------KRNQSVSEMIPRHRKWENVTDLEK

Query:  QTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
        QTFYRFLHKTY+ HPI LA ILYSIGGAPF IWGM
Subjt:  QTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM

XP_022955962.1 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucurbita moschata]8.6e-4369.06Show/hide
Query:  ICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHA----------------------------------------LQKRNQSVSEMIPRHRKWENVT
        I   LFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHA                                        LQKRNQSVSEMIPRHRKWENVT
Subjt:  ICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHA----------------------------------------LQKRNQSVSEMIPRHRKWENVT

Query:  DLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
        DLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
Subjt:  DLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM

XP_022980469.1 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucurbita maxima]8.6e-3552.63Show/hide
Query:  LEWPLMSNYHPKGICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ----------------------------------------KRNQSVS
        + W  +S      I   LFGITISYHRNL+HK+FK+ KWLEYL AYCG+HA Q                                        K +++V 
Subjt:  LEWPLMSNYHPKGICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ----------------------------------------KRNQSVS

Query:  EMIPRHRKWENVTDLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
        EMIPRHRKWEN TDLEKQTFYRFLHKTY+LHPI +A ILYSIGG PFFIWGM
Subjt:  EMIPRHRKWENVTDLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM

XP_023529140.1 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucurbita pepo subsp. pepo]7.3e-3456.52Show/hide
Query:  ICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ----------------------------------------KRNQSVSEMIPRHRKWENVT
        I   LFGITISYHRNL+HK+FK+PK LEYL AYCG+HALQ                                        KR++S +E+IP+HRKWEN T
Subjt:  ICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ----------------------------------------KRNQSVSEMIPRHRKWENVT

Query:  DLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWG
        DLEKQTFYRFLHKTYLLHPI +A ILYSIGG PFFIWG
Subjt:  DLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWG

TrEMBL top hitse value%identityAlignment
A0A6J1GV23 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like4.1e-4369.06Show/hide
Query:  ICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHA----------------------------------------LQKRNQSVSEMIPRHRKWENVT
        I   LFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHA                                        LQKRNQSVSEMIPRHRKWENVT
Subjt:  ICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHA----------------------------------------LQKRNQSVSEMIPRHRKWENVT

Query:  DLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
        DLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
Subjt:  DLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM

A0A6J1GWI8 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like2.7e-3457.78Show/hide
Query:  LFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ----------------------------------------KRNQSVSEMIPRHRKWENVTDLEK
        LFG+TISYHRNLTHK+F LPKWLEYL AYCG+H+ Q                                        KR++SV+EMIPR RKWEN TDLEK
Subjt:  LFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ----------------------------------------KRNQSVSEMIPRHRKWENVTDLEK

Query:  QTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
        QTFYRFLHKTY+ HPI LA ILYSIGGAPF IWGM
Subjt:  QTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM

A0A6J1GWJ3 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like3.5e-3456.52Show/hide
Query:  ICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ----------------------------------------KRNQSVSEMIPRHRKWENVT
        I   LFGITISYHRNL+HK+FK+PK LEYL AYCG+HALQ                                        KR++S +E+IP+HRKWEN T
Subjt:  ICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ----------------------------------------KRNQSVSEMIPRHRKWENVT

Query:  DLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWG
        DLEKQTFYRFLHKTYLLHPI +A ILYSIGG PFFIWG
Subjt:  DLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWG

A0A6J1IRG4 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like4.6e-3457.04Show/hide
Query:  LFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ----------------------------------------KRNQSVSEMIPRHRKWENVTDLEK
        LFG+TISYHRNLTHK+F LPKWLEYL AYCG+H+ Q                                        KR++S++EMIPR RKWEN TDLEK
Subjt:  LFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ----------------------------------------KRNQSVSEMIPRHRKWENVTDLEK

Query:  QTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
        QTFYRFLHKTY+ HPI LA ILYSIGGAPF IWGM
Subjt:  QTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM

A0A6J1IZD1 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like4.2e-3552.63Show/hide
Query:  LEWPLMSNYHPKGICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ----------------------------------------KRNQSVS
        + W  +S      I   LFGITISYHRNL+HK+FK+ KWLEYL AYCG+HA Q                                        K +++V 
Subjt:  LEWPLMSNYHPKGICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ----------------------------------------KRNQSVS

Query:  EMIPRHRKWENVTDLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
        EMIPRHRKWEN TDLEKQTFYRFLHKTY+LHPI +A ILYSIGG PFFIWGM
Subjt:  EMIPRHRKWENVTDLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM

SwissProt top hitse value%identityAlignment
P0DOW2 Acyl-CoA C20 Delta5-desaturase1.5e-1839.55Show/hide
Query:  ICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ--------------KRNQSVSE---------------------MIPRHRKWENVTDLEKQ
        IC  +FG T+S+HRNLTH++FKLPK+LEY  AY GLHALQ              K   +  +                     +I +  ++EN  DL KQ
Subjt:  ICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ--------------KRNQSVSE---------------------MIPRHRKWENVTDLEKQ

Query:  TFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
        ++YRFL +T++ H    AA+LY  GG PF +WGM
Subjt:  TFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM

P0DOW3 Acyl-CoA 5-desaturase AL211.2e-1839.23Show/hide
Query:  LFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ-----------KRNQSVSEMIPRHR------------------------KWENVTDLEKQTFYR
        +FG T+SYHRNLTH++FKLPK+LEY  AY GLHALQ             ++     +  H                         ++EN  DL KQ++YR
Subjt:  LFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ-----------KRNQSVSEMIPRHR------------------------KWENVTDLEKQTFYR

Query:  FLHKTYLLHPITLAAILYSIGGAPFFIWGM
        FL +T++ H    AA+LY  GG PF +WGM
Subjt:  FLHKTYLLHPITLAAILYSIGGAPFFIWGM

Q949X0 Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic5.4e-2442.58Show/hide
Query:  LGFLKPLE--WPLMSNYHPKGICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ------------KRNQSVSEMIPR---------HRKW--
        L  L P +  W  +S      I   L GIT+S+HRNL+HK FKLPKWLEYL AYCG  ALQ                  S+  P          H  W  
Subjt:  LGFLKPLE--WPLMSNYHPKGICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ------------KRNQSVSEMIPR---------HRKW--

Query:  ------------ENVTDLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
                     NV DLEKQ FYRFL  TY+LHP+ LA  LY++GG PF +WGM
Subjt:  ------------ENVTDLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM

Q9FV68 Icosanoyl-CoA 5-desaturase (Fragment)3.8e-1736.69Show/hide
Query:  GICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQKRNQSVSEMIPRHR---------------------------------------KWENVT
        G    + GIT+ +HR LTH  FKLPK +EY  AYCG  ALQ       E +  HR                                       +  NV 
Subjt:  GICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQKRNQSVSEMIPRHR---------------------------------------KWENVT

Query:  DLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
        DL+KQ FYRFL KTY+ H + L A+LY +GG P+ +WGM
Subjt:  DLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM

Q9SID2 Delta-9 acyl-lipid desaturase 24.9e-1741.41Show/hide
Query:  GITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ------------KRNQSVSEMIPR---------HRKW--------------ENVTDLEKQTFYRFL
        GIT+SYHRNL H++FK+PKWLEYLLAYC L A+Q                + SE  P          H  W               NV DL++Q FYRFL
Subjt:  GITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ------------KRNQSVSEMIPR---------HRKW--------------ENVTDLEKQTFYRFL

Query:  HKTYLLHPITLAAILYSIGGAPFFIWGM
         KT L H + L   L+ +GG  F  WGM
Subjt:  HKTYLLHPITLAAILYSIGGAPFFIWGM

Arabidopsis top hitse value%identityAlignment
AT1G06080.1 delta 9 desaturase 12.3e-1738.28Show/hide
Query:  GITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ------------KRNQSVSEMIPR---------HRKW--------------ENVTDLEKQTFYRFL
        GIT+SYHRNL H++FK+PKWLEY  AYCGL A+Q                + S+  P          H  W               NV DL++Q +Y+FL
Subjt:  GITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ------------KRNQSVSEMIPR---------HRKW--------------ENVTDLEKQTFYRFL

Query:  HKTYLLHPITLAAILYSIGGAPFFIWGM
         +T L H +T   +LY  GG  F  WGM
Subjt:  HKTYLLHPITLAAILYSIGGAPFFIWGM

AT1G06120.1 Fatty acid desaturase family protein2.3e-1437.78Show/hide
Query:  GICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ------------KRNQSVSEMIPR---------HRKW--------------ENVTDLEK
        GI  +L  IT SYHRNLTH++FKLPKWLEY  AY  L ALQ                + S+  P          H  W              +NV DL++
Subjt:  GICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ------------KRNQSVSEMIPR---------HRKW--------------ENVTDLEK

Query:  QTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
        Q FYRFL  T  LH +T   ++Y  GG P+  W +
Subjt:  QTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM

AT2G31360.1 16:0delta9 desaturase 23.5e-1841.41Show/hide
Query:  GITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ------------KRNQSVSEMIPR---------HRKW--------------ENVTDLEKQTFYRFL
        GIT+SYHRNL H++FK+PKWLEYLLAYC L A+Q                + SE  P          H  W               NV DL++Q FYRFL
Subjt:  GITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ------------KRNQSVSEMIPR---------HRKW--------------ENVTDLEKQTFYRFL

Query:  HKTYLLHPITLAAILYSIGGAPFFIWGM
         KT L H + L   L+ +GG  F  WGM
Subjt:  HKTYLLHPITLAAILYSIGGAPFFIWGM

AT3G15850.1 fatty acid desaturase 53.9e-2542.58Show/hide
Query:  LGFLKPLE--WPLMSNYHPKGICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ------------KRNQSVSEMIPR---------HRKW--
        L  L P +  W  +S      I   L GIT+S+HRNL+HK FKLPKWLEYL AYCG  ALQ                  S+  P          H  W  
Subjt:  LGFLKPLE--WPLMSNYHPKGICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ------------KRNQSVSEMIPR---------HRKW--

Query:  ------------ENVTDLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
                     NV DLEKQ FYRFL  TY+LHP+ LA  LY++GG PF +WGM
Subjt:  ------------ENVTDLEKQTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM

AT3G15870.1 Fatty acid desaturase family protein4.3e-1637.04Show/hide
Query:  GICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ------------KRNQSVSEMIPR---------HRKW--------------ENVTDLEK
        GIC     IT+SYHRNL+H++F LPKWLEYL AY G+ A Q                  ++  P          H  W              ENV DL +
Subjt:  GICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQ------------KRNQSVSEMIPR---------HRKW--------------ENVTDLEK

Query:  QTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM
        Q FYRFL +T LLH +  + + Y  GG P  +WG+
Subjt:  QTFYRFLHKTYLLHPITLAAILYSIGGAPFFIWGM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTCGAGTACTCAGCTAGGTTGGGCATTGAATGGTGGCAATATGACCCTGGTTGGTATGTCATTAGGTTTCTTGAAGCCATTGGAGTGGCCACTCATGTCAAATTA
CCATCCCAAAGGCATATGCAAAAGTCTCTTTGGCATCACTATTTCATATCACCGAAATCTTACACATAAGACTTTCAAACTTCCCAAATGGCTCGAATACTTGCTTGCTT
ACTGCGGACTTCATGCCCTTCAGAAGAGGAATCAAAGCGTTAGTGAAATGATTCCAAGGCATCGAAAATGGGAAAATGTTACAGATTTGGAGAAGCAAACATTCTATAGG
TTTCTTCACAAAACATATTTACTTCATCCAATTACTCTTGCAGCCATACTTTATAGCATTGGAGGCGCTCCTTTCTTCATTTGGGGAATGTTACGATTTTATATGTTATG
A
mRNA sequenceShow/hide mRNA sequence
ATGCTTTCGAGTACTCAGCTAGGTTGGGCATTGAATGGTGGCAATATGACCCTGGTTGGTATGTCATTAGGTTTCTTGAAGCCATTGGAGTGGCCACTCATGTCAAATTA
CCATCCCAAAGGCATATGCAAAAGTCTCTTTGGCATCACTATTTCATATCACCGAAATCTTACACATAAGACTTTCAAACTTCCCAAATGGCTCGAATACTTGCTTGCTT
ACTGCGGACTTCATGCCCTTCAGAAGAGGAATCAAAGCGTTAGTGAAATGATTCCAAGGCATCGAAAATGGGAAAATGTTACAGATTTGGAGAAGCAAACATTCTATAGG
TTTCTTCACAAAACATATTTACTTCATCCAATTACTCTTGCAGCCATACTTTATAGCATTGGAGGCGCTCCTTTCTTCATTTGGGGAATGTTACGATTTTATATGTTATG
A
Protein sequenceShow/hide protein sequence
MLSSTQLGWALNGGNMTLVGMSLGFLKPLEWPLMSNYHPKGICKSLFGITISYHRNLTHKTFKLPKWLEYLLAYCGLHALQKRNQSVSEMIPRHRKWENVTDLEKQTFYR
FLHKTYLLHPITLAAILYSIGGAPFFIWGMLRFYML