CuGenDBv2

Gene ID	CmoCh14G014760
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	54S ribosomal protein L51, mitochondrial-like
Genome location	Cmo_Chr14:11926748..11929588
RNA-Seq Expression	CmoCh14G014760
Synteny	CmoCh14G014760
Gene Ontology terms	GO:0032543 - mitochondrial translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR036249 - Thioredoxin-like superfamily IPR039927 - 39S ribosomal protein L43/54S ribosomal protein L51

Homology

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GenBank top hits

e value

%identity

Alignment

XP_014507563.1 54S ribosomal protein L51, mitochondrial [Vigna radiata var. radiata]

6.0e-28

64.49

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Query:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS-----------------SATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR
        MA +GVWQL KL+VSYC+WGGSSRG IRAFM+S LP FKEK+                  A  K+ N RVICVKNMDPEDIH+HATRLRNALGRKV+KLR
Subjt:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS-----------------SATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR

Query:  TRHLIFH
        TRH+  H
Subjt:  TRHLIFH

XP_022979453.1 54S ribosomal protein L51, mitochondrial-like [Cucurbita maxima]

4.5e-31

72.12

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Query:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-----------------KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR
        MA +GVWQLKKLIVSYCDWGGSSRG IRAFMDSELP F+EK+                     KS+NHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR
Subjt:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-----------------KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR

Query:  TRHL
        TRH+
Subjt:  TRHL

XP_023528298.1 54S ribosomal protein L51, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]

1.7e-30

71.15

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Query:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-----------------KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR
        MA +GVWQLKKLIVSYCDWGGSSRG IRAFMDSELP F+EK+                     KS+NHRVICV NMDPEDIHLHATRLRNALGRKVLKLR
Subjt:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-----------------KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR

Query:  TRHL
        TRH+
Subjt:  TRHL

XP_023528299.1 54S ribosomal protein L51, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo]

1.7e-30

71.15

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Query:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-----------------KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR
        MA +GVWQLKKLIVSYCDWGGSSRG IRAFMDSELP F+EK+                     KS+NHRVICV NMDPEDIHLHATRLRNALGRKVLKLR
Subjt:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-----------------KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR

Query:  TRHL
        TRH+
Subjt:  TRHL

XP_039066844.1 54S ribosomal protein L51, mitochondrial-like [Hibiscus syriacus]

4.6e-28

66.36

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Query:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS-----------------SATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR
        MA +GVWQLKKLIVSYCDWGGSSRG IRAFM+SELPTFKEK+                  A  K+ N RV+CVKNM PEDI LHATRLRNALGRKV+KL+
Subjt:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS-----------------SATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR

Query:  TRHLIFH
        TRH+  H
Subjt:  TRHLIFH

TrEMBL top hits

e value

%identity

Alignment

A0A0S3R580 L51_S25_CI-B8 domain-containing protein

3.8e-28

64.49

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Query:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-----------------KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR
        MA +GVWQL KL+VSYC+WGGSSRG IRAFM+S LP FKEK+                     K+ N RVICVKNMDPEDIHLHATRLRNALGRKV+KLR
Subjt:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-----------------KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR

Query:  TRHLIFH
        TRH+  H
Subjt:  TRHLIFH

A0A1S3UNB7 54S ribosomal protein L51, mitochondrial

2.9e-28

64.49

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Query:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS-----------------SATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR
        MA +GVWQL KL+VSYC+WGGSSRG IRAFM+S LP FKEK+                  A  K+ N RVICVKNMDPEDIH+HATRLRNALGRKV+KLR
Subjt:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS-----------------SATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR

Query:  TRHLIFH
        TRH+  H
Subjt:  TRHLIFH

A0A5D2J6A4 L51_S25_CI-B8 domain-containing protein

5.0e-28

65.42

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Query:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-----------------KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR
        MAF+GVWQLKKLIVSYCDWGGSSRG IRAFM+SELPTFKEK+                     K+ N RV+CVKNM PEDI L+ATRLRNALGRKV+KL+
Subjt:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-----------------KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR

Query:  TRHLIFH
        TRH+  H
Subjt:  TRHLIFH

A0A6A3BPN9 Detected protein of confused Function

2.2e-28

66.36

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Query:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS-----------------SATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR
        MA +GVWQLKKLIVSYCDWGGSSRG IRAFM+SELPTFKEK+                  A  K+ N RV+CVKNM PEDI LHATRLRNALGRKV+KL+
Subjt:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS-----------------SATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR

Query:  TRHLIFH
        TRH+  H
Subjt:  TRHLIFH

A0A6J1IW90 54S ribosomal protein L51, mitochondrial-like

2.2e-31

72.12

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Query:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-----------------KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR
        MA +GVWQLKKLIVSYCDWGGSSRG IRAFMDSELP F+EK+                     KS+NHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR
Subjt:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN-----------------KSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR

Query:  TRHL
        TRH+
Subjt:  TRHL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G59650.1 mitochondrial ribosomal protein L51/S25/CI-B8 family protein

9.9e-29

58.88

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Query:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS-----------------SATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR
        MA +GVWQLKKL+VSYC+WGGSSRG IRAFM+SELP  KEK+                     ++ N RV+CVKNMDPE++ L+ATRLRN+LGRKV+KLR
Subjt:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKS-----------------SATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLR

Query:  TRHLIFH
        TRH+  H
Subjt:  TRHLIFH

AT3G59650.2 mitochondrial ribosomal protein L51/S25/CI-B8 family protein

3.9e-25

47.01

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Query:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN--------------------------------------------KSSNHRVICV
        MA +GVWQLKKL+VSYC+WGGSSRG IRAFM+SELP  KEK+                                                 + N RV+CV
Subjt:  MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATN--------------------------------------------KSSNHRVICV

Query:  KNMDPEDIHLHATRLRNALGRKVLKLRTRHLIFH
        KNMDPE++ L+ATRLRN+LGRKV+KLRTRH+  H
Subjt:  KNMDPEDIHLHATRLRNALGRKVLKLRTRHLIFH

Sequences

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CDS sequence

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ATGGCTTTCCAAGGTGTATGGCAGCTTAAGAAGCTGATTGTCAGCTATTGTGACTGGGGAGGAAGCAGCAGGGGTATTATCAGGGCATTTATGGACTCAGAATTGCCAAC
TTTTAAAGAGAAATCCTCAGCTACAAATAAAAGCAGTAATCATCGGGTGATATGTGTGAAGAACATGGATCCGGAAGACATACATTTACATGCAACCAGACTAAGGAATG
CACTGGGACGAAAGGTCTTAAAACTGAGGACAAGACATTTAATATTTCATTTGAATCAGATGTTGAATGGCATTTCTGAGAAAGCTAAACCTCAACTCAAATTCTCCAGG
AGCAAATGCTAG

mRNA sequence

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TTTCTTTCACGTTCAGCCACCCCCTCCACTCCATTACCAGCCGCCGCCGCCGCACTCTCAGCTGCCACAGTCTCAGCCTTCCGAGAGTTTCTAATCTCTGTTCCCCAGAA
ACCCAGTGGTTCGCCGTTGGTGCGATCGCGCCGCCGCCGCTCGTTTTCCAAATTCCCAAGAATATAGATGGCTTTCCAAGGTGTATGGCAGCTTAAGAAGCTGATTGTCA
GCTATTGTGACTGGGGAGGAAGCAGCAGGGGTATTATCAGGGCATTTATGGACTCAGAATTGCCAACTTTTAAAGAGAAATCCTCAGCTACAAATAAAAGCAGTAATCAT
CGGGTGATATGTGTGAAGAACATGGATCCGGAAGACATACATTTACATGCAACCAGACTAAGGAATGCACTGGGACGAAAGGTCTTAAAACTGAGGACAAGACATTTAAT
ATTTCATTTGAATCAGATGTTGAATGGCATTTCTGAGAAAGCTAAACCTCAACTCAAATTCTCCAGGAGCAAATGCTAG

Protein sequence

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MAFQGVWQLKKLIVSYCDWGGSSRGIIRAFMDSELPTFKEKSSATNKSSNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHLIFHLNQMLNGISEKAKPQLKFSR
SKC

CmoCh14G014760 (gene) of Cucurbita moschata (Rifu) v1 genome