; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh14G014940 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G014940
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNuclear transport factor 2
Genome locationCmo_Chr14:12005786..12008748
RNA-Seq ExpressionCmoCh14G014940
SyntenyCmoCh14G014940
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
InterPro domainsIPR002075 - Nuclear transport factor 2
IPR018222 - Nuclear transport factor 2, eukaryote
IPR032710 - NTF2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582032.1 Nuclear transport factor 2B, partial [Cucurbita argyrosperma subsp. sororia]1.9e-4899Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSM TFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

KAG7018458.1 Nuclear transport factor 2 [Cucurbita argyrosperma subsp. argyrosperma]1.1e-4898.04Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

Query:  LL
         L
Subjt:  LL

XP_022956152.1 nuclear transport factor 2B [Cucurbita moschata]3.8e-49100Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

XP_022979987.1 nuclear transport factor 2B [Cucurbita maxima]1.4e-4899Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQD SMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

XP_023526029.1 nuclear transport factor 2B [Cucurbita pepo subsp. pepo]3.8e-49100Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

TrEMBL top hitse value%identityAlignment
A0A0A0KW20 NTF2 domain-containing protein8.5e-4795Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANRA L NLYQD SMLTFEGQKIQGSPNIVAKL+SLPFQQC+HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

A0A6J1F2G7 nuclear transport factor 2B-like1.1e-4695Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANR+GLANLYQD SMLTFEGQKIQGS NIVAKLTSLPFQQCQHSVSTVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

A0A6J1GVJ2 nuclear transport factor 2B1.8e-49100Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

A0A6J1I548 nuclear transport factor 2B-like1.4e-4695Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANR GLANLYQD SMLTFEGQKIQGS NIVAKLTSLPFQQCQHSVSTVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

A0A6J1IQ79 nuclear transport factor 2B6.9e-4999Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQD SMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

SwissProt top hitse value%identityAlignment
Q75AA5 Nuclear transport factor 24.8e-2347.32Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MD  A+A+ F + YY+ FD +R+ L NLY+D SMLTFE  ++QG+ +IV KL SLPFQ+ QH ++T+D QP+ P G +LV ++G+L +  EQ+A +FSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

Query:  LLDLFQFNSSQV
           + + NS  V
Subjt:  LLDLFQFNSSQV

Q96VN3 Nuclear transport factor 22.2e-2356.12Show/hide
Query:  DPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        D  ++A+ FV  YY TFD NRAGLA LY+D SMLTFE   IQG   I+ KLTSLPFQ+ QH VST+D QPSG  GG+LV V+G L +  E++ + ++Q
Subjt:  DPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

Q9C7F5 Nuclear transport factor 2B1.4e-4384Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG  +IVAKLTSLPFQQC+H +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

Q9FZK4 Nuclear transport factor 2A2.0e-4587Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQGS NIVAKLT LPFQQC+H+++TVDCQPSGP GGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

Q9XJ54 Nuclear transport factor 21.4e-3368Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MD DAVAKAFV+HYY TFD NR  L +LYQD SMLTFEGQ+  G+  I  KL SLPF QC H ++TVDCQPSGP GGMLVFVSG+L+   ++H LKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

Arabidopsis top hitse value%identityAlignment
AT1G11570.1 NTF2-like5.6e-2758.82Show/hide
Query:  DAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQM
        + VA AFV+HYY  FD +R+ L++LY  TS+LTFEGQ I G  NI  KL  LPF QC H +STVD QPS   G  GG+LVFVSG++QL GE H L+FSQ+
Subjt:  DAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQM

Query:  LL
         L
Subjt:  LL

AT1G11570.2 NTF2-like1.6e-2659.6Show/hide
Query:  DAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQ
        + VA AFV+HYY  FD +R+ L++LY  TS+LTFEGQ I G  NI  KL  LPF QC H +STVD QPS   G  GG+LVFVSG++QL GE H L+FSQ
Subjt:  DAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQ

AT1G27310.1 nuclear transport factor 2A1.4e-4687Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQGS NIVAKLT LPFQQC+H+++TVDCQPSGP GGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

AT1G27970.1 nuclear transport factor 2B1.0e-4484Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG  +IVAKLTSLPFQQC+H +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM

AT1G27970.2 nuclear transport factor 2B1.0e-4484Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG  +IVAKLTSLPFQQC+H +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCCGACGCGGTGGCTAAGGCATTCGTCGATCATTATTACTCTACCTTTGACGCCAATCGAGCTGGTCTTGCTAATCTCTACCAGGACACTTCTATGTTGACGTT
TGAAGGTCAGAAGATCCAAGGCTCGCCGAATATTGTCGCCAAGCTTACTAGCCTTCCCTTCCAGCAGTGCCAGCACTCCGTTAGCACTGTCGATTGCCAGCCGTCCGGCC
CCACTGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCTGGTGAACAACATGCTCTCAAATTCAGTCAGATGTTGCTTGATTTGTTTCAGTTTAATTCTAGC
CAGGTTCTTGAATGGGTTACTCAACCCATCTCTGAGCTTCAAAATAAAGGACACCTCAGAAACTTGCCAAGCAACGTTGAGGACAACCATGGCGGAAACAAGGCATTTCT
GTGTTCTTCTGAAACAAACTGA
mRNA sequenceShow/hide mRNA sequence
CGAACCCTCGGCTAACGCTGTCGTCTCCATTTCCTTCTCTGCGAAACTCGGCGTCGTTCCCAAGCGGGGCGGAAGAAAGTGGGTTTTTGTTATCTCTTTCCCAGCGGCGG
ATTTCAACTTTATCGGAATGGATCCCGACGCGGTGGCTAAGGCATTCGTCGATCATTATTACTCTACCTTTGACGCCAATCGAGCTGGTCTTGCTAATCTCTACCAGGAC
ACTTCTATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCGCCGAATATTGTCGCCAAGCTTACTAGCCTTCCCTTCCAGCAGTGCCAGCACTCCGTTAGCACTGTCGA
TTGCCAGCCGTCCGGCCCCACTGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCTGGTGAACAACATGCTCTCAAATTCAGTCAGATGTTGCTTGATTTGT
TTCAGTTTAATTCTAGCCAGGTTCTTGAATGGGTTACTCAACCCATCTCTGAGCTTCAAAATAAAGGACACCTCAGAAACTTGCCAAGCAACGTTGAGGACAACCATGGC
GGAAACAAGGCATTTCTGTGTTCTTCTGAAACAAACTGA
Protein sequenceShow/hide protein sequence
MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQMLLDLFQFNSS
QVLEWVTQPISELQNKGHLRNLPSNVEDNHGGNKAFLCSSETN