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CmoCh14G016340 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G016340
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionleucine-rich repeat extensin-like protein 6
Genome locationCmo_Chr14:12975073..12975600
RNA-Seq ExpressionCmoCh14G016340
SyntenyCmoCh14G016340
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582188.1 hypothetical protein SDJN03_22190, partial [Cucurbita argyrosperma subsp. sororia]4.7e-8898.29Show/hide
Query:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY
        METAISLKFF+SLTAVLLSFPAGFSSL TADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPP+INCPPPPSPPSSGTYYYSPPPPPSQPTYTY
Subjt:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY

Query:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
        SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
Subjt:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF

XP_022955565.1 leucine-rich repeat extensin-like protein 6 [Cucurbita moschata]1.9e-89100Show/hide
Query:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY
        METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY
Subjt:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY

Query:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
        SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
Subjt:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF

XP_022979944.1 leucine-rich repeat extensin-like protein 6 [Cucurbita maxima]1.8e-8798.29Show/hide
Query:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY
        METAISLKFFISLTAVLLSF AGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSI+CPPPPSPPSSGTYYYSPPPPPSQPTYTY
Subjt:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY

Query:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
        SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLF FLLALF
Subjt:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF

XP_023526139.1 leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]8.0e-8898.86Show/hide
Query:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY
        METAISLK FISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY
Subjt:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY

Query:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
        SS PPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
Subjt:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF

XP_038906774.1 leucine-rich repeat extensin-like protein 6 [Benincasa hispida]1.3e-6683.52Show/hide
Query:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY
        METAISL+FFISLTAVLL FPAGFSSLP ADRR  AGAKYQIECTMCSACDNPCGQYLSPPP    PPP +NCPPPPSPPSSGTYYY  PPPP+QPTYTY
Subjt:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY

Query:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAA-GRLTNSWACSVLTVPLFLFLLALF
        SSPPPP G  G  GYYQPPPY+NYPAPPPPNPIVPYFPFY+HTPPPGS+AA G LTNS A SVLTV LF FLL LF
Subjt:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAA-GRLTNSWACSVLTVPLFLFLLALF

TrEMBL top hitse value%identityAlignment
A0A0A0LAN7 Nutrient reservoir1.2e-6580.11Show/hide
Query:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY
        MET I L+F ISLTA+LL FP+G SSLP    R+ AGAKYQIECTMCSACDNPC QYLSPPPPPPSPPP +NCPPPPSPPSSGTY Y  PPPP+QP+YTY
Subjt:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY

Query:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAA-GRLTNSWACSVLTVPLFLFLLALF
        SSPPPP G  GP GYYQPPPYSNYPAPPPPNPIVPYFPF++HTPPPGS+AA  RLTNS  CSVLTV LF FLLALF
Subjt:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAA-GRLTNSWACSVLTVPLFLFLLALF

A0A5A7U5R9 Nutrient reservoir6.7e-6479.1Show/hide
Query:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTY-YYSPPPPPSQPTYT
        ME  ISL+  ISLT +LL      SSLP    R+ AGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPP +NCPPPPSPP+SGTY YYSPPPPP+QPTYT
Subjt:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTY-YYSPPPPPSQPTYT

Query:  YSSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAA-GRLTNSWACSVLTVPLFLFLLALF
        YSSPPPP G  GP GYYQPPPY+NYPAPPPPNPIVPYFPFY+HTPPPGS+AA GRLTNS  CSVLTV LF FLL LF
Subjt:  YSSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAA-GRLTNSWACSVLTVPLFLFLLALF

A0A6J1C7N8 leucine-rich repeat extensin-like protein 31.3e-6276.97Show/hide
Query:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGA---KYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPT
        ME    L+F + L AVLL FPA   SLP  DRRT AGA   KYQIECTMCSACDNPCGQYLSPPPPPPSPPP +NCPPPPSPPSSGTYYY  PPPP+QPT
Subjt:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGA---KYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPT

Query:  YTYSSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
        YTYSSPPPP G  G  GYYQPPPYSNYPAPPPPNPIVPYFPFY+HTPPPGS+AA  LT + ACSV T  LF  LLALF
Subjt:  YTYSSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF

A0A6J1GVF6 leucine-rich repeat extensin-like protein 69.3e-90100Show/hide
Query:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY
        METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY
Subjt:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY

Query:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
        SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
Subjt:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF

A0A6J1IXZ9 leucine-rich repeat extensin-like protein 68.7e-8898.29Show/hide
Query:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY
        METAISLKFFISLTAVLLSF AGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSI+CPPPPSPPSSGTYYYSPPPPPSQPTYTY
Subjt:  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTY

Query:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF
        SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLF FLLALF
Subjt:  SSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF

SwissProt top hitse value%identityAlignment
O65375 Leucine-rich repeat extensin-like protein 13.4e-0446.09Show/hide
Query:  YLSPPPPPPSPPPSI--NCPPPP---------SPPSSGTYYYSP----PPPPS---QPTYTYSSPPPPPGNYGPSGYYQPPPYSNY-----PAPPPPNPI
        Y SPPPPPPSPPP    + PPPP         SPP     YY P    PPPPS    P  T S PPP P  Y P  Y  PPP   Y     P+PPPP+P+
Subjt:  YLSPPPPPPSPPPSI--NCPPPP---------SPPSSGTYYYSP----PPPPS---QPTYTYSSPPPPPGNYGPSGYYQPPPYSNY-----PAPPPPNPI

Query:  VPYFPFYFHTPPPGS
          Y+P    +PPP S
Subjt:  VPYFPFYFHTPPPGS

Q9LUI1 Leucine-rich repeat extensin-like protein 65.2e-0545.38Show/hide
Query:  RRTLAGAK----YQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPPYSNYPAP
        +R+LA  K    Y I+C     C  P     SPPPPPP PPP    PPPP PP        PPPPP  P Y Y SPPPPP +  P  Y  PPP   Y  P
Subjt:  RRTLAGAK----YQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPPYSNYPAP

Query:  PPPNPIVPYFPFYFHTPPP
        PPP+P     P+ +  PPP
Subjt:  PPPNPIVPYFPFYFHTPPP

Q9T0K5 Leucine-rich repeat extensin-like protein 36.1e-0647.12Show/hide
Query:  PCGQYLSPP----PPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPPYSNYP------APPPPNPIVPYFPFYFH
        P   + +PP    PPPPSPPP +  PPPP PP    Y   PPPPP  P   YS PPPPP    P   Y PPP S  P      +PPPP P  P  P Y  
Subjt:  PCGQYLSPP----PPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPPYSNYP------APPPPNPIVPYFPFYFH

Query:  TPPP
         PPP
Subjt:  TPPP

Arabidopsis top hitse value%identityAlignment
AT3G06750.1 hydroxyproline-rich glycoprotein family protein1.8e-2154.76Show/hide
Query:  IECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYF
        + CTMCS+CDNPC    +P P   SPPP    PPP S    G+YYYSPPPP S     Y   PPP G  G  GYY PP Y NY  PPPPNPIVPYFPFY+
Subjt:  IECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPPYSNYPAPPPPNPIVPYFPFYF

Query:  HTPPPGSAAAGRLTNSWACSVLTVPL
        HTPP G + + RL NS   ++  V L
Subjt:  HTPPPGSAAAGRLTNSWACSVLTVPL

AT3G22800.1 Leucine-rich repeat (LRR) family protein3.7e-0645.38Show/hide
Query:  RRTLAGAK----YQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPPYSNYPAP
        +R+LA  K    Y I+C     C  P     SPPPPPP PPP    PPPP PP        PPPPP  P Y Y SPPPPP +  P  Y  PPP   Y  P
Subjt:  RRTLAGAK----YQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPPYSNYPAP

Query:  PPPNPIVPYFPFYFHTPPP
        PPP+P     P+ +  PPP
Subjt:  PPPNPIVPYFPFYFHTPPP

AT4G13340.1 Leucine-rich repeat (LRR) family protein4.3e-0747.12Show/hide
Query:  PCGQYLSPP----PPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPPYSNYP------APPPPNPIVPYFPFYFH
        P   + +PP    PPPPSPPP +  PPPP PP    Y   PPPPP  P   YS PPPPP    P   Y PPP S  P      +PPPP P  P  P Y  
Subjt:  PCGQYLSPP----PPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPPYSNYP------APPPPNPIVPYFPFYFH

Query:  TPPP
         PPP
Subjt:  TPPP

AT4G16140.1 proline-rich family protein1.3e-1953.54Show/hide
Query:  TLAGAKYQIECTMCSACDNPCGQYLSPPPPP--PSPPP----SINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPPYS--NYP
        TL       +CTMC++CDNPC    SPPPPP  PSPPP    +  CPPPPS    G YYY PP   S      S  PPP  + G  GYY PPP S  NYP
Subjt:  TLAGAKYQIECTMCSACDNPCGQYLSPPPPP--PSPPP----SINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPPYS--NYP

Query:  APPPPNPIVPYFPFYFHTPPPGSAAAG
          PPPNPIVPYFPFY++ PPP S  +G
Subjt:  APPPPNPIVPYFPFYFHTPPPGSAAAG

AT5G49280.1 hydroxyproline-rich glycoprotein family protein3.2e-2657.97Show/hide
Query:  IECTMCSACDNPCGQYLSPPPPPPSPPPS---INCPPPPSPPSSG---TYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPPYS-NYPAPPPPNPIV
        + CTMCS+CDNPC    S PPPP  PPPS     CPPPPSPPSSG   +YYY   PPPSQ       PPP  G  G  GYY PPPYS NYP PPPPNPIV
Subjt:  IECTMCSACDNPCGQYLSPPPPPPSPPPS---INCPPPPSPPSSG---TYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQPPPYS-NYPAPPPPNPIV

Query:  PYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLL
        PYFPFY+HTPPPGS  + R  +S++       +FL L+
Subjt:  PYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTGCCATTTCTCTGAAATTTTTCATCTCTCTCACGGCGGTTCTGCTCAGTTTTCCGGCAGGATTTTCGTCCCTACCGACGGCCGACCGCCGCACTCTCGCCGG
CGCTAAATACCAAATCGAATGCACAATGTGCTCTGCTTGTGACAATCCCTGCGGCCAGTATCTGTCTCCACCACCTCCTCCGCCGTCCCCTCCTCCATCCATCAACTGCC
CACCACCACCTTCTCCCCCCAGCTCCGGTACCTACTATTACTCTCCTCCGCCTCCTCCATCTCAACCCACCTACACATACTCCTCCCCGCCGCCGCCGCCTGGCAACTAC
GGACCGAGCGGGTACTACCAACCGCCTCCGTACAGTAATTACCCGGCCCCCCCACCGCCGAACCCGATTGTGCCGTATTTCCCATTCTATTTTCACACTCCGCCACCGGG
CTCCGCCGCTGCCGGCCGTTTGACGAACTCTTGGGCTTGCTCTGTTCTTACTGTTCCTCTGTTTTTGTTCTTACTTGCTTTGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACTGCCATTTCTCTGAAATTTTTCATCTCTCTCACGGCGGTTCTGCTCAGTTTTCCGGCAGGATTTTCGTCCCTACCGACGGCCGACCGCCGCACTCTCGCCGG
CGCTAAATACCAAATCGAATGCACAATGTGCTCTGCTTGTGACAATCCCTGCGGCCAGTATCTGTCTCCACCACCTCCTCCGCCGTCCCCTCCTCCATCCATCAACTGCC
CACCACCACCTTCTCCCCCCAGCTCCGGTACCTACTATTACTCTCCTCCGCCTCCTCCATCTCAACCCACCTACACATACTCCTCCCCGCCGCCGCCGCCTGGCAACTAC
GGACCGAGCGGGTACTACCAACCGCCTCCGTACAGTAATTACCCGGCCCCCCCACCGCCGAACCCGATTGTGCCGTATTTCCCATTCTATTTTCACACTCCGCCACCGGG
CTCCGCCGCTGCCGGCCGTTTGACGAACTCTTGGGCTTGCTCTGTTCTTACTGTTCCTCTGTTTTTGTTCTTACTTGCTTTGTTTTAA
Protein sequenceShow/hide protein sequence
METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNY
GPSGYYQPPPYSNYPAPPPPNPIVPYFPFYFHTPPPGSAAAGRLTNSWACSVLTVPLFLFLLALF