; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh14G016680 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G016680
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionE3 ubiquitin-protein ligase RBBP6 isoform X2
Genome locationCmo_Chr14:13147245..13148631
RNA-Seq ExpressionCmoCh14G016680
SyntenyCmoCh14G016680
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582225.1 hypothetical protein SDJN03_22227, partial [Cucurbita argyrosperma subsp. sororia]3.0e-7397.52Show/hide
Query:  MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP
        MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLS+INPQILELAVRNAKASVLSSSGTNIRHVDTFDDP
Subjt:  MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP

Query:  EASFDDGEAMNSEPKKQ--KNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL
        EASFDDGEAMNSEPKKQ  KNKNKKNKKNKNKKTKKNKRQKKIVEDSGC VGKRPKKKLKL
Subjt:  EASFDDGEAMNSEPKKQ--KNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL

XP_022956118.1 uncharacterized protein LOC111457905 isoform X1 [Cucurbita moschata]8.4e-76100Show/hide
Query:  MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP
        MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP
Subjt:  MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP

Query:  EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL
        EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL
Subjt:  EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL

XP_022956119.1 uncharacterized protein LOC111457905 isoform X2 [Cucurbita moschata]4.6e-7499.37Show/hide
Query:  MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP
        MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP
Subjt:  MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP

Query:  EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL
        EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQ KIVEDSGCGVGKRPKKKLKL
Subjt:  EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL

XP_022979960.1 uncharacterized protein LOC111479494 [Cucurbita maxima]3.6e-7198.1Show/hide
Query:  MEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDPE
        MEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDPE
Subjt:  MEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDPE

Query:  ASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL
        ASFDDGEAMNSEPKKQKNKNKKNK  KNKKTKKNKRQ KIVEDSGCGVGKRPKKKLKL
Subjt:  ASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL

XP_023527659.1 uncharacterized protein LOC111790822 isoform X1 [Cucurbita pepo subsp. pepo]1.7e-7398.74Show/hide
Query:  MEDLSEEERRALRGSKFAPLPSQPT-SSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP
        MEDLSEEERRALRGSKFAPLPSQPT SSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP
Subjt:  MEDLSEEERRALRGSKFAPLPSQPT-SSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP

Query:  EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL
        EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNK+QKKIVEDSGCGVGKRPKKKLKL
Subjt:  EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL

TrEMBL top hitse value%identityAlignment
A0A0A0LAK0 Uncharacterized protein7.7e-5986.79Show/hide
Query:  MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP
        +MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKL+QDPN LSSINPQIL+LAVRNAKASV  SSGTNIRHVDTFDDP
Subjt:  MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP

Query:  EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL
        EASFD+GE+MNSEPKKQK KNKK KKNKN   KKNKRQ KIVEDS CGVG +PKKKL+L
Subjt:  EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL

A0A1S3AY37 uncharacterized protein LOC1034838322.5e-5786.54Show/hide
Query:  MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP
        +MEDL+EEERRALRGSKFAPLPSQ TSSRSHPRLAHPGGPLKTNKAAALAKFL RKLHQDPN  SSINPQIL+LAVRNAKASV  SSGTNIRHVDTFDDP
Subjt:  MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP

Query:  EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKK
        EASFD+GE+MNSEPKKQK KNKK KKNKN   KKNKRQ KIVEDS CGVGK P  K
Subjt:  EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKK

A0A6J1GVW4 uncharacterized protein LOC111457905 isoform X14.0e-76100Show/hide
Query:  MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP
        MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP
Subjt:  MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP

Query:  EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL
        EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL
Subjt:  EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL

A0A6J1GY51 uncharacterized protein LOC111457905 isoform X22.2e-7499.37Show/hide
Query:  MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP
        MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP
Subjt:  MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDP

Query:  EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL
        EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQ KIVEDSGCGVGKRPKKKLKL
Subjt:  EASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL

A0A6J1IUT6 uncharacterized protein LOC1114794941.8e-7198.1Show/hide
Query:  MEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDPE
        MEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDPE
Subjt:  MEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDPE

Query:  ASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL
        ASFDDGEAMNSEPKKQKNKNKKNK  KNKKTKKNKRQ KIVEDSGCGVGKRPKKKLKL
Subjt:  ASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G18540.1 unknown protein1.8e-3659.88Show/hide
Query:  EDLSEEERRALRGSKFAPLPSQPTSSRSH-PRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVL----SSSGTNIRHVDTF
        E+L+E+E+RALRGSKFAPL S P+SSRS  PRLAHPGGPLKTNKAAALAKFL+RKL QDPNGL+SI+P ++ELAV+NAK +V+    SSSG  I+HV +F
Subjt:  EDLSEEERRALRGSKFAPLPSQPTSSRSH-PRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVL----SSSGTNIRHVDTF

Query:  DDPEASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL
        +D E S DD +  N++  K+K K    KK + KK KKNK+ K+ +        KRP KKLKL
Subjt:  DDPEASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL

AT5G18540.2 unknown protein3.1e-3660.49Show/hide
Query:  EDLSEEERRALRGSKFAPLPSQPTSSRSH-PRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVL----SSSGTNIRHVDTF
        E+L+E+E+RALRGSKFAPL S P+SSRS  PRLAHPGGPLKTNKAAALAKFL+RKL QDPNGL+SI+P ++ELAV+NAK +V+    SSSG  I+HV +F
Subjt:  EDLSEEERRALRGSKFAPLPSQPTSSRSH-PRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVL----SSSGTNIRHVDTF

Query:  DDPEASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL
        +D E S DD +  N++  K+K K    KK + KK KKNK+ K  V++      KRP KKLKL
Subjt:  DDPEASFDDGEAMNSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGAGGATCTTAGCGAAGAAGAAAGACGAGCTTTACGGGGCAGCAAATTCGCGCCACTCCCATCCCAACCCACTTCCTCCAGATCTCACCCCAGGTTGGCTCATCC
TGGTGGTCCATTGAAGACAAACAAGGCGGCGGCTCTCGCCAAGTTTCTCGACAGGAAACTGCATCAAGATCCTAATGGTTTGTCTTCTATCAATCCCCAGATTTTGGAGC
TCGCCGTTCGGAATGCCAAGGCCTCTGTTCTCTCCAGTTCTGGCACAAATATTCGCCATGTGGACACTTTCGATGACCCTGAGGCCTCTTTTGACGATGGGGAAGCCATG
AATTCTGAGCCTAAAAAACAGAAGAACAAGAACAAGAAGAACAAGAAGAACAAGAACAAGAAAACTAAGAAGAATAAAAGGCAAAAAAAGATCGTTGAGGATTCCGGGTG
TGGCGTTGGGAAAAGACCCAAAAAGAAGTTGAAATTGTGA
mRNA sequenceShow/hide mRNA sequence
GTTCAGCCTCCCGCCCAGTGAGACGACAAAATGGAGTTTTCCCGGTCATCCCCAATAGAGAAGAGGAAGGAGGGAAGAGGGCGATGCGGTAAAAGGCGCAGAAAGAAAGC
ATCCGTCTGCAGATTTGAGAGAAAATCCATAAAGTAATAAGGGCATAATAATAATAGGAGGATGATGGAGGATCTTAGCGAAGAAGAAAGACGAGCTTTACGGGGCAGCA
AATTCGCGCCACTCCCATCCCAACCCACTTCCTCCAGATCTCACCCCAGGTTGGCTCATCCTGGTGGTCCATTGAAGACAAACAAGGCGGCGGCTCTCGCCAAGTTTCTC
GACAGGAAACTGCATCAAGATCCTAATGGTTTGTCTTCTATCAATCCCCAGATTTTGGAGCTCGCCGTTCGGAATGCCAAGGCCTCTGTTCTCTCCAGTTCTGGCACAAA
TATTCGCCATGTGGACACTTTCGATGACCCTGAGGCCTCTTTTGACGATGGGGAAGCCATGAATTCTGAGCCTAAAAAACAGAAGAACAAGAACAAGAAGAACAAGAAGA
ACAAGAACAAGAAAACTAAGAAGAATAAAAGGCAAAAAAAGATCGTTGAGGATTCCGGGTGTGGCGTTGGGAAAAGACCCAAAAAGAAGTTGAAATTGTGAGCAGAAACA
CAACTAACACAACTGGAGATATTCAGTTTTCAAAAGGTTGGATTGGGGAATAACCTGAAAGGAGTTAAAATGCTGTGTTTTGAATCAAGAAGCTATTGAGCCCTACAGGG
TTGCTGTTCCTGATATTTGTTAAGAGGATTATTTGAGTCTCAGATTCACGAATCTTAAACATTTGATTGACTTGATTTCTCTAGCAAAAGAATGCTTTTAGCTTCTACTT
TCTTGTAATCCAATTGCTTGAATACTTACTATTACCTATTTGATCATTCTAGAATTCCATGCTTAAATGGGTCTTCTTCTACTC
Protein sequenceShow/hide protein sequence
MMEDLSEEERRALRGSKFAPLPSQPTSSRSHPRLAHPGGPLKTNKAAALAKFLDRKLHQDPNGLSSINPQILELAVRNAKASVLSSSGTNIRHVDTFDDPEASFDDGEAM
NSEPKKQKNKNKKNKKNKNKKTKKNKRQKKIVEDSGCGVGKRPKKKLKL