CuGenDBv2

Gene ID	CmoCh14G017880
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Meiotic recombination protein DMC1 homolog
Genome location	Cmo_Chr14:13759012..13759916
RNA-Seq Expression	CmoCh14G017880
Synteny	CmoCh14G017880
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0006996 - organelle organization (biological process) GO:1903046 - meiotic cell cycle process (biological process) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR013632 - DNA recombination and repair protein Rad51-like, C-terminal IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

KAF8090212.1 hypothetical protein N665_0482s0009 [Sinapis alba]

2.7e-29

52.6

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Query:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD
        D  L+RKSVVRITTG QALD  LGG        +F  S+       GIET AITEAFGEFRSGKTQLAHT                   Y+      RPD
Subjt:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD

Query:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ
        RIVPIAER G+DPGAVLDN+       +   ++  LGLAAKMS EPFK +  +S +  + VDFTGRGELADRQ
Subjt:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ

XP_021608701.1 meiotic recombination protein DMC1 homolog isoform X2 [Manihot esculenta]

9.4e-30

53.99

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Query:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHTYL-----------SIRSRPDRIVPIAERSG
        D  LRRK+V+RITTG+QALD  LGG                     GIETLAITEAFGEFRSGKTQLAHT              I SRPDRIVPIAER G
Subjt:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHTYL-----------SIRSRPDRIVPIAERSG

Query:  VDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ
        +DPGAVLDN+       +   ++  LGLAAKMS EPF+ +  +S +  + VDFTGRGELA+RQ
Subjt:  VDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ

XP_021691994.1 meiotic recombination protein DMC1 homolog isoform X2 [Hevea brasiliensis]

1.2e-29

53.37

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Query:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHTY-----------LSIRSRPDRIVPIAERSG
        D  LRRKSV+RITTG+QALD  LGG                     GIETLAITEAFGEFRSGKTQLAHT                SRPDRI+PIAER G
Subjt:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHTY-----------LSIRSRPDRIVPIAERSG

Query:  VDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ
        +DPGAVLDN+       +   ++  LGLAAKMS EPF+ +  +S +  + VDFTGRGELA+RQ
Subjt:  VDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ

XP_038724136.1 meiotic recombination protein DMC1 homolog isoform X1 [Tripterygium wilfordii]

6.1e-29

52.02

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Query:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD
        D  LRRKSVVRITTG+QALD  LGG                     GIETLAITEAFGEFRSGKTQLAHT                   Y+      RPD
Subjt:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD

Query:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ
        RIVPIAER G+DPGAVLDN+       +   ++  LGLAAKMS EPF+ +  +S +  + VDFTGRGELADRQ
Subjt:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ

XP_038724137.1 meiotic recombination protein DMC1 homolog isoform X2 [Tripterygium wilfordii]

6.1e-29

52.02

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Query:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD
        D  LRRKSVVRITTG+QALD  LGG                     GIETLAITEAFGEFRSGKTQLAHT                   Y+      RPD
Subjt:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD

Query:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ
        RIVPIAER G+DPGAVLDN+       +   ++  LGLAAKMS EPF+ +  +S +  + VDFTGRGELADRQ
Subjt:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ

TrEMBL top hits

e value

%identity

Alignment

A0A6J1IA86 meiotic recombination protein DMC1 homolog isoform X2

8.6e-29

49.46

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Query:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD
        D  LRRKSVVRITTG+QALD  LGG                     GIETLAITEAFGEFRSGKTQLAHT                   Y+      RPD
Subjt:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD

Query:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQVESNRLKQQTT
        RIVPIAER G+DPGAVLDN+       +    +  LGLAAKMS EPFK +  +S +  + VDFTGRGELA+RQ +  ++  + T
Subjt:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQVESNRLKQQTT

A0A6J1IBC8 meiotic recombination protein DMC1 homolog isoform X1

8.6e-29

49.46

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Query:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD
        D  LRRKSVVRITTG+QALD  LGG                     GIETLAITEAFGEFRSGKTQLAHT                   Y+      RPD
Subjt:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD

Query:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQVESNRLKQQTT
        RIVPIAER G+DPGAVLDN+       +    +  LGLAAKMS EPFK +  +S +  + VDFTGRGELA+RQ +  ++  + T
Subjt:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQVESNRLKQQTT

A0A7J7CRR1 Meiotic recombination protein DMC1-like protein

3.0e-29

52.02

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Query:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD
        D  LRRKSVVRITTG+QALD  LGG                     GIETLAITEAFGEFRSGKTQLAHT                   Y+      RPD
Subjt:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD

Query:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ
        RIVPIAER G+DPGAVLDN+       +   ++  LGLAAKMS EPF+ +  +S +  + VDFTGRGELADRQ
Subjt:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ

A0A7J7CWV7 Meiotic recombination protein DMC1-like protein

6.6e-29

51.45

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Query:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD
        D  +RRKSVVRITTG+QALD  LGG                     GIETLAITEAFGEFRSGKTQLAHT                   Y+      RPD
Subjt:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD

Query:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ
        RIVPIAER G+DPGAVLDN+       +   ++  LGLAAKMS EPF+ +  +S +  + VDFTGRGELADRQ
Subjt:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ

W9RXM4 Meiotic recombination protein DMC1-like protein

8.6e-29

48.37

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Query:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD
        D  LRRKSVVRITTG+QALD  LGG                     GIETLAITEAFGEFRSGKTQLAHT                   Y+      RPD
Subjt:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD

Query:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQVESNRLKQQTT
        RI+PIAER G+DPGAVLDN+       +   ++  +GLAAKMS EPF+ +  +S +  + VDFTGRGELADRQ +  ++  + T
Subjt:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQVESNRLKQQTT

SwissProt top hits

e value

%identity

Alignment

B8BM09 Meiotic recombination protein DMC1 homolog A

1.6e-27

43.96

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Query:  DYCLRRKSVVRITTGNQALDLGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPDRI
        D  ++RKSVVRITTG+QALD                      G GIETL ITEAFGEFRSGKTQLAHT                   Y+      RP+RI
Subjt:  DYCLRRKSVVRITTGNQALDLGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPDRI

Query:  VPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQVESNRLKQQTT
        VPIAER G+D  AVLDN+       +   ++  LGLAAKM+ EPF+ +  +S +  + VDF+GRGELA+RQ +  ++  + T
Subjt:  VPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQVESNRLKQQTT

Q39009 Meiotic recombination protein DMC1 homolog

1.7e-29

49.71

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Query:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD
        D  ++RKSVV+ITTG QALD  LGG                     GIET AITEAFGEFRSGKTQLAHT                   Y+      RPD
Subjt:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD

Query:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ
        RIVPIAER G+DPGAVLDN+       +   ++  LGLAAKMS EPF+ +  +S +  + VDFTGRGELADRQ
Subjt:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ

Q7EAG4 Meiotic recombination protein DMC1 homolog B

1.6e-27

44.57

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Query:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD
        D  ++RKSVVRITTG+QALD  LGG                     GIETL ITEAFGEFRSGKTQLAHT                   Y+      RP+
Subjt:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD

Query:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQVESNRLKQQTT
        RIVPIAER G+D  AVLDN+       +   ++  LGLAAKM+ EPF+ +  +S +  + VDF+GRGELA+RQ +  ++  + T
Subjt:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQVESNRLKQQTT

Q7GBF8 Meiotic recombination protein DMC1 homolog A

1.6e-27

43.96

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Query:  DYCLRRKSVVRITTGNQALDLGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPDRI
        D  ++RKSVVRITTG+QALD                      G GIETL ITEAFGEFRSGKTQLAHT                   Y+      RP+RI
Subjt:  DYCLRRKSVVRITTGNQALDLGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPDRI

Query:  VPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQVESNRLKQQTT
        VPIAER G+D  AVLDN+       +   ++  LGLAAKM+ EPF+ +  +S +  + VDF+GRGELA+RQ +  ++  + T
Subjt:  VPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQVESNRLKQQTT

Q96449 Meiotic recombination protein DMC1 homolog

5.7e-30

49.13

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Query:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD
        D  L+RKSV+RITTG+QALD  LGG                     G+ET AITEAFGEFRSGKTQLAHT                   Y+      RPD
Subjt:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD

Query:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ
        RIVPIAER G+DPGAVLDN+       +   ++  LGLAAKMS EPF+ +  +S +  + VDF+GRGELADRQ
Subjt:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G22880.1 DNA repair (Rad51) family protein

1.2e-30

49.71

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Query:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD
        D  ++RKSVV+ITTG QALD  LGG                     GIET AITEAFGEFRSGKTQLAHT                   Y+      RPD
Subjt:  DYCLRRKSVVRITTGNQALD--LGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPD

Query:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ
        RIVPIAER G+DPGAVLDN+       +   ++  LGLAAKMS EPF+ +  +S +  + VDFTGRGELADRQ
Subjt:  RIVPIAERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQ

AT5G20850.1 RAS associated with diabetes protein 51

2.1e-11

31.55

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Query:  RRKSVVRITTGNQALDLGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPDRIVPIA
        +R+ +++IT+G++ LD                  ++ +G GIET +ITE +GEFRSGKTQL HT                   Y+      RP R++ IA
Subjt:  RRKSVVRITTGNQALDLGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHT-------------------YLSIRS--RPDRIVPIA

Query:  ERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQV
        +R G++   VL+NV+              L  A+ M    F  +  +S    Y  DF+GRGEL+ RQ+
Subjt:  ERSGVDPGAVLDNVSTMFFIFFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENY-VDFTGRGELADRQV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATGCAGACTTAGTCCTTGATTATTGTTTGCGGAGAAAGTCAGTGGTTCGCATTACGACTGGAAATCAGGCTCTCGATTTAGGAGGCAAGTTCTGCTTTATGACGTT
CCTTTTTTTCACTATCTCGAAAATCAGAATCACTAAAGGAAGCGGGATTGAAACTCTAGCGATCACGGAAGCTTTTGGAGAATTCAGGTCCGGGAAAACGCAACTCGCGC
ATACTTACCTGTCTATACGCAGCCGACCTGATCGAATTGTGCCTATAGCTGAAAGATCTGGCGTGGACCCGGGAGCTGTCCTTGACAATGTAAGCACCATGTTTTTCATT
TTTTTTTTCAAAATGTTCTCCCCTTATCTCGGCCTTGCCGCAAAAATGTCTGCAGAACCATTTAAACAGGTAACCTGTAACTCAAACGTCGAAAACTATGTGGATTTCAC
CGGAAGGGGAGAACTCGCGGATCGCCAGGTCGAATCAAATAGACTTAAACAACAGACAACGTTTCAGAATTTGATTTCCCTAGGTAGATATTCGTTTCAGAATTTCATTT
CCCTATGTAGATATTTGTTGTCATCTTGTTTCATCATTAATGACACAAGCTGCTTGACACATGCAGCAAATATTGGCGCAGATGCTGTCCCGATTAACTAA

mRNA sequence

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Protein sequence

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MNADLVLDYCLRRKSVVRITTGNQALDLGGKFCFMTFLFFTISKIRITKGSGIETLAITEAFGEFRSGKTQLAHTYLSIRSRPDRIVPIAERSGVDPGAVLDNVSTMFFI
FFFKMFSPYLGLAAKMSAEPFKQVTCNSNVENYVDFTGRGELADRQVESNRLKQQTTFQNLISLGRYSFQNFISLCRYLLSSCFIINDTSCLTHAANIGADAVPIN

CmoCh14G017880 (gene) of Cucurbita moschata (Rifu) v1 genome