CuGenDBv2

Gene ID	CmoCh14G017890
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	meiotic recombination protein DMC1 homolog
Genome location	Cmo_Chr14:13760065..13760611
RNA-Seq Expression	CmoCh14G017890
Synteny	CmoCh14G017890
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0006310 - DNA recombination (biological process) GO:0007127 - meiosis I (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0140097 - catalytic activity, acting on DNA (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

CAB4105761.1 unnamed protein product [Lactuca saligna]

2.1e-12

59.49

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Query:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        TSHGINAGDVKK+QDAGIYTCNG +M TK            KVDKIC+AAEK              NFGYITGS+ALLR
Subjt:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

GFS37194.1 DNA repair (Rad51) family protein [Actinidia rufa]

4.2e-13

62.82

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Query:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        SHGINAGDVKK+QDAGIYTCNG +M TK            KVDKIC+AAEK  V  +   S LS N+GYITGS+ALLR
Subjt:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

KAD6118746.1 hypothetical protein E3N88_10017 [Mikania micrantha]

2.1e-12

59.49

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Query:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        TSHGINAGDVKK+QDAGIYTCNG +M TK            KVDKIC+AAEK              NFGYITGS+ALLR
Subjt:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

KVI01551.1 AAA+ ATPase domain-containing protein [Cynara cardunculus var. scolymus]

2.1e-12

59.49

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Query:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        TSHGINAGDVKK+QDAGIYTCNG +M TK            KVDKIC+AAEK              NFGYITGS+ALLR
Subjt:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

PLY94026.1 hypothetical protein LSAT_7X66001 [Lactuca sativa]

2.1e-12

59.49

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Query:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        TSHGINAGDVKK+QDAGIYTCNG +M TK            KVDKIC+AAEK              NFGYITGS+ALLR
Subjt:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

TrEMBL top hits

e value

%identity

Alignment

A0A2J6M362 Uncharacterized protein

1.0e-12

59.49

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Query:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        TSHGINAGDVKK+QDAGIYTCNG +M TK            KVDKIC+AAEK              NFGYITGS+ALLR
Subjt:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

A0A5N6PC45 Uncharacterized protein

1.0e-12

59.49

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Query:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        TSHGINAGDVKK+QDAGIYTCNG +M TK            KVDKIC+AAEK              NFGYITGS+ALLR
Subjt:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

A0A6S7PHB3 Uncharacterized protein

1.0e-12

59.49

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Query:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        TSHGINAGDVKK+QDAGIYTCNG +M TK            KVDKIC+AAEK              NFGYITGS+ALLR
Subjt:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

A0A7J0DMI7 DNA repair (Rad51) family protein

2.0e-13

62.82

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Query:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        SHGINAGDVKK+QDAGIYTCNG +M TK            KVDKIC+AAEK  V  +   S LS N+GYITGS+ALLR
Subjt:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

A5HIJ7 DMC1

1.0e-12

59.49

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Query:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        TSHGINAGDVKK+QDAGIYTCNG +M TK            KVDKIC+AAEK              NFGYITGS+ALLR
Subjt:  TSHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

SwissProt top hits

e value

%identity

Alignment

B8BM09 Meiotic recombination protein DMC1 homolog A

1.6e-10

52.56

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Query:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        S GIN+GDVKK+QDAGIYTCNG +M TK            KVDKIC+AAEK          LLS   G+ITGS+ L++
Subjt:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

P37384 Meiotic recombination protein DMC1 homolog

3.7e-12

53.85

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Query:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        S GINAGDVKK+QDAGIYTCNG +M TK            KVDKIC+AAEK              N GYITGS+ LL+
Subjt:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

Q39009 Meiotic recombination protein DMC1 homolog

1.8e-11

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Query:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        + GINAGDVKK+Q+AGI+TCNG +M TK            KVDKIC+AAEK              NFGY+TGS+AL++
Subjt:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

Q7GBF8 Meiotic recombination protein DMC1 homolog A

1.6e-10

52.56

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Query:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        S GIN+GDVKK+QDAGIYTCNG +M TK            KVDKIC+AAEK          LLS   G+ITGS+ L++
Subjt:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

Q96449 Meiotic recombination protein DMC1 homolog

4.4e-13

55.13

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Query:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        + GINAGDVKK+QDAGIYTCNG +M TK            KVDKIC+AAEK              NFGYITGS+ALL+
Subjt:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

Arabidopsis top hits

e value

%identity

Alignment

AT3G22880.1 DNA repair (Rad51) family protein

1.3e-12

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Query:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR
        + GINAGDVKK+Q+AGI+TCNG +M TK            KVDKIC+AAEK              NFGY+TGS+AL++
Subjt:  SHGINAGDVKKIQDAGIYTCNGFVMLTK------------KVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLR

Sequences

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CDS sequence

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ATGCGGATAGTTTTAGCCAATCAACTGACTATCATGTTGTTCCACTACATCCGAAAGAGTTCCTTTGCCATTTTTCTGTGCAGTACTTCTCATGGAATTAATGCTGGAGA
CGTGAAAAAGATTCAGGACGCAGGGATATACACCTGCAACGGTTTCGTGATGCTCACGAAGAAGGTTGATAAGATCTGCAAAGCTGCCGAAAAGCAAGCGGTGAGCGAAT
CAGTCGCCACTTCTCTATTATCCACGAATTTTGGTTATATCACTGGAAGCAATGCTCTGCTCAGGGCAAGCTGCTTCTGTTTTTTATTAGTAACAAATGGAATGCCTAAC
CAAATAGATCGATAG

mRNA sequence

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Protein sequence

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MRIVLANQLTIMLFHYIRKSSFAIFLCSTSHGINAGDVKKIQDAGIYTCNGFVMLTKKVDKICKAAEKQAVSESVATSLLSTNFGYITGSNALLRASCFCFLLVTNGMPN
QIDR

CmoCh14G017890 (gene) of Cucurbita moschata (Rifu) v1 genome