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CmoCh14G018560 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G018560
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionC2H2-type domain-containing protein
Genome locationCmo_Chr14:14007233..14007805
RNA-Seq ExpressionCmoCh14G018560
SyntenyCmoCh14G018560
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049241.1 hypothetical protein E6C27_scaffold171G004810 [Cucumis melo var. makuwa]2.7e-2036.99Show/hide
Query:  MAFLLKAPL-------------SFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNTIFGVPCGLCGQGILVSETLNHHCTISCLMSLLL-----LG
        MAFLL+ PL             S PW SS F KS  NPS  ++LFTS ++S RP  R+NTIFG PCGLCGQ I  SE LNHH     L + L        
Subjt:  MAFLLKAPL-------------SFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNTIFGVPCGLCGQGILVSETLNHHCTISCLMSLLL-----LG

Query:  PI--ISLLRKLLAAAVMDQLFPWPSLCFSKTPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPPPTVLTF--------------------NRIR
        P   +S               P  +L    T   +LR H  A          A+DMAH+LPLHPLLA+PPP   T                     N+IR
Subjt:  PI--ISLLRKLLAAAVMDQLFPWPSLCFSKTPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPPPTVLTF--------------------NRIR

Query:  LWRG-----------------------NNENNCSSGGSEDLDLTLS
           G                       + EN+CSS GSE LDLTLS
Subjt:  LWRG-----------------------NNENNCSSGGSEDLDLTLS

KAG6582389.1 hypothetical protein SDJN03_22391, partial [Cucurbita argyrosperma subsp. sororia]8.7e-10498.42Show/hide
Query:  MAFLLKAPLSFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNTIFGVPCGLCGQGILVSETLNHHCTISCLMSLLLLGPIISLLRKLLAAAVMDQL
        MAFLLKAP SFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPC RKNTIFG PCGLCGQGILVSETLNHHCTISCLMSLLLLGPIISLLRKLLAAAVMDQL
Subjt:  MAFLLKAPLSFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNTIFGVPCGLCGQGILVSETLNHHCTISCLMSLLLLGPIISLLRKLLAAAVMDQL

Query:  FPWPSLCFSKTPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPPPTVLTFNRIRLWRGNNENNCSSGGSEDLDLTLSKEVHVIF
        FPWPSLCFSKTPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPPPTVLTFNRIRLWRGNNENNCSSGGSEDLDLTLSKEVHVIF
Subjt:  FPWPSLCFSKTPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPPPTVLTFNRIRLWRGNNENNCSSGGSEDLDLTLSKEVHVIF

KAG6597359.1 hypothetical protein SDJN03_10539, partial [Cucurbita argyrosperma subsp. sororia]2.1e-2538.33Show/hide
Query:  LSFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNTIFGVPCGLCGQGILVSETLNHHCTISCLMSLLLLGPIISLLRKLLAAAVMDQLFP-WPSLC
        L+FPW SSP++KS WNPS +ELL  S +TS RP RRK+TIFG PCGLCGQ I  SE LNHH     L +      + S   +L+ ++   Q  P W    
Subjt:  LSFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNTIFGVPCGLCGQGILVSETLNHHCTISCLMSLLLLGPIISLLRKLLAAAVMDQLFP-WPSLC

Query:  FSK---------TPNDTLRLHDDAATVSKKLF-RRAVDMAHWLPLHPLLAQPPP--TVLTFNRI------RLWRGN------------------------
          +         T N+ L +       S + +    VDMAH LPLHPLLAQPPP   + T N +      + W+GN                        
Subjt:  FSK---------TPNDTLRLHDDAATVSKKLF-RRAVDMAHWLPLHPLLAQPPP--TVLTFNRI------RLWRGN------------------------

Query:  ---------NENNCSSGGSEDLDLTLS
                  EN+CSS GS+ LDLTLS
Subjt:  ---------NENNCSSGGSEDLDLTLS

KGN56847.1 hypothetical protein Csa_010766 [Cucumis sativus]1.9e-2136.73Show/hide
Query:  MAFLLKAP-------------LSFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNTIFGVPCGLCGQGILVSETLNHHCTISCLMSLLLLGPIISL
        M FLL+ P             LSFP  SS F +SS NPS   +LFTS ++S RP RRKNTIFG PCGLCGQ I  SE LNHH     L +      + S 
Subjt:  MAFLLKAP-------------LSFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNTIFGVPCGLCGQGILVSETLNHHCTISCLMSLLLLGPIISL

Query:  LRKLLAAAVMDQLFPWPSLCF------SKTPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPP--PTVLTFNRIRL-----------------W
              ++ + Q  P  S  F      S+ P  TL  +       +     A+DMAH+LPLHPLLAQPP  P   T NR+                   W
Subjt:  LRKLLAAAVMDQLFPWPSLCF------SKTPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPP--PTVLTFNRIRL-----------------W

Query:  R------------------------GNNENNCSSGGSEDLDLTLS
                                  + EN+CSS  SE LDLTLS
Subjt:  R------------------------GNNENNCSSGGSEDLDLTLS

TrEMBL top hitse value%identityAlignment
A0A0A0L892 C2H2-type domain-containing protein9.0e-2236.73Show/hide
Query:  MAFLLKAP-------------LSFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNTIFGVPCGLCGQGILVSETLNHHCTISCLMSLLLLGPIISL
        M FLL+ P             LSFP  SS F +SS NPS   +LFTS ++S RP RRKNTIFG PCGLCGQ I  SE LNHH     L +      + S 
Subjt:  MAFLLKAP-------------LSFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNTIFGVPCGLCGQGILVSETLNHHCTISCLMSLLLLGPIISL

Query:  LRKLLAAAVMDQLFPWPSLCF------SKTPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPP--PTVLTFNRIRL-----------------W
              ++ + Q  P  S  F      S+ P  TL  +       +     A+DMAH+LPLHPLLAQPP  P   T NR+                   W
Subjt:  LRKLLAAAVMDQLFPWPSLCF------SKTPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPP--PTVLTFNRIRL-----------------W

Query:  R------------------------GNNENNCSSGGSEDLDLTLS
                                  + EN+CSS  SE LDLTLS
Subjt:  R------------------------GNNENNCSSGGSEDLDLTLS

A0A5A7U6I9 C2H2-type domain-containing protein1.3e-2036.99Show/hide
Query:  MAFLLKAPL-------------SFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNTIFGVPCGLCGQGILVSETLNHHCTISCLMSLLL-----LG
        MAFLL+ PL             S PW SS F KS  NPS  ++LFTS ++S RP  R+NTIFG PCGLCGQ I  SE LNHH     L + L        
Subjt:  MAFLLKAPL-------------SFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNTIFGVPCGLCGQGILVSETLNHHCTISCLMSLLL-----LG

Query:  PI--ISLLRKLLAAAVMDQLFPWPSLCFSKTPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPPPTVLTF--------------------NRIR
        P   +S               P  +L    T   +LR H  A          A+DMAH+LPLHPLLA+PPP   T                     N+IR
Subjt:  PI--ISLLRKLLAAAVMDQLFPWPSLCFSKTPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPPPTVLTF--------------------NRIR

Query:  LWRG-----------------------NNENNCSSGGSEDLDLTLS
           G                       + EN+CSS GSE LDLTLS
Subjt:  LWRG-----------------------NNENNCSSGGSEDLDLTLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTCCTCCTTAAAGCTCCTCTGTCTTTCCCATGGAAGTCCTCCCCCTTTGATAAATCTAGCTGGAACCCATCATTCAAGGAGCTGTTGTTTACCTCCCGCAAGAC
ATCTTGCCGGCCATGTCGCCGGAAAAACACGATTTTCGGTGTCCCTTGTGGGCTCTGTGGCCAAGGGATTCTTGTCTCTGAAACTCTTAATCACCATTGCACCATTTCTT
GTCTAATGAGCTTGCTTCTTTTGGGACCAATTATTTCCTTGCTCCGAAAGCTCTTAGCAGCCGCCGTTATGGACCAATTATTTCCATGGCCTAGCCTCTGCTTCTCGAAA
ACCCCAAATGACACTTTACGATTACATGACGATGCCGCCACCGTCTCTAAGAAGCTATTCCGGCGCGCCGTCGACATGGCCCACTGGCTTCCGCTTCATCCCTTGTTGGC
CCAACCACCGCCGACGGTATTAACGTTCAACAGAATCAGGCTTTGGCGTGGCAATAATGAGAATAACTGTAGCTCTGGTGGTTCAGAAGACTTGGATTTGACTCTCTCTA
AAGAAGTTCATGTTATTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTCCTCCTTAAAGCTCCTCTGTCTTTCCCATGGAAGTCCTCCCCCTTTGATAAATCTAGCTGGAACCCATCATTCAAGGAGCTGTTGTTTACCTCCCGCAAGAC
ATCTTGCCGGCCATGTCGCCGGAAAAACACGATTTTCGGTGTCCCTTGTGGGCTCTGTGGCCAAGGGATTCTTGTCTCTGAAACTCTTAATCACCATTGCACCATTTCTT
GTCTAATGAGCTTGCTTCTTTTGGGACCAATTATTTCCTTGCTCCGAAAGCTCTTAGCAGCCGCCGTTATGGACCAATTATTTCCATGGCCTAGCCTCTGCTTCTCGAAA
ACCCCAAATGACACTTTACGATTACATGACGATGCCGCCACCGTCTCTAAGAAGCTATTCCGGCGCGCCGTCGACATGGCCCACTGGCTTCCGCTTCATCCCTTGTTGGC
CCAACCACCGCCGACGGTATTAACGTTCAACAGAATCAGGCTTTGGCGTGGCAATAATGAGAATAACTGTAGCTCTGGTGGTTCAGAAGACTTGGATTTGACTCTCTCTA
AAGAAGTTCATGTTATTTTCTAA
Protein sequenceShow/hide protein sequence
MAFLLKAPLSFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNTIFGVPCGLCGQGILVSETLNHHCTISCLMSLLLLGPIISLLRKLLAAAVMDQLFPWPSLCFSK
TPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPPPTVLTFNRIRLWRGNNENNCSSGGSEDLDLTLSKEVHVIF