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CmoCh14G019310 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G019310
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionF-box domain-containing protein
Genome locationCmo_Chr14:14314118..14314580
RNA-Seq ExpressionCmoCh14G019310
SyntenyCmoCh14G019310
Gene Ontology termsNA
InterPro domainsIPR025886 - Phloem protein 2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582459.1 putative F-box protein PP2-B12, partial [Cucurbita argyrosperma subsp. sororia]5.1e-1475.86Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV
        RF EVAELQ VWWLEI G+IEARNLSP+TNYA Y VFKLVEDR +   F ERPVLL V
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV

XP_022924695.1 putative F-box protein PP2-B12 [Cucurbita moschata]5.1e-1475.86Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV
        RF EVAELQ VWWLEI G+IEARNLSP+TNYA Y VFKLVEDR +   F ERPVLL V
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV

XP_022980373.1 putative F-box protein PP2-B12 [Cucurbita maxima]8.7e-1475.86Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV
        RF EVAELQ VWWLEI G IEARNLSP+TNYA Y VFKLVEDR +   F ERPVLL V
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV

XP_023526106.1 LOW QUALITY PROTEIN: putative F-box protein PP2-B12 [Cucurbita pepo subsp. pepo]1.6e-3193.42Show/hide
Query:  LLRDNYIIVLSSYDEFKLLNHRFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCEFNERPVLLEV
        LLRDNYIIVL+S DEFKLLNHRFPEVAELQNVWWLEIYGKIEARNLSP TNY VYFVFKLVEDR EFNERPVLLEV
Subjt:  LLRDNYIIVLSSYDEFKLLNHRFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCEFNERPVLLEV

XP_023528482.1 putative F-box protein PP2-B12 [Cucurbita pepo subsp. pepo]3.0e-1475.86Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV
        RF EVAELQ VWWLEI G+IEARNLSP+TNYA Y VFKLVEDR +   F ERPVLL V
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV

TrEMBL top hitse value%identityAlignment
A0A0A0L6T0 F-box domain-containing protein1.0e-1274.14Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV
        RF EVAELQ VWWLEI GKIEAR+LSP+T YA YFVFKLVEDR     F  RPV LEV
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV

A0A1S3AW73 putative F-box protein PP2-B121.4e-1272.41Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV
        R+PEVAELQ VWWLEI GKIEAR+LSP+T YA YFVFKLV DR     F  RPV LEV
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV

A0A5A7U6B1 Putative F-box protein PP2-B121.4e-1272.41Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV
        R+PEVAELQ VWWLEI GKIEAR+LSP+T YA YFVFKLV DR     F  RPV LEV
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV

A0A6J1EFS1 putative F-box protein PP2-B122.5e-1475.86Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV
        RF EVAELQ VWWLEI G+IEARNLSP+TNYA Y VFKLVEDR +   F ERPVLL V
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV

A0A6J1IZ41 putative F-box protein PP2-B124.2e-1475.86Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV
        RF EVAELQ VWWLEI G IEARNLSP+TNYA Y VFKLVEDR +   F ERPVLL V
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCE---FNERPVLLEV

SwissProt top hitse value%identityAlignment
Q3E6P4 F-box protein At2g022407.0e-0656.82Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRC
        RF ++AEL +V W EI GK  AR LSP T Y+ Y VFK  +DRC
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRC

Q6NPT8 F-box protein PP2-B11.0e-0451.16Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDR
        +F +VAEL+NV W E+ GKI    LS  T+Y+VY VFK    R
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDR

Q949S5 F-box protein PP2-B111.8e-0666.67Show/hide
Query:  LLNHRFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFK
        L N RF EVAEL  VWWLEI GKI    LS  T YA YFVFK
Subjt:  LLNHRFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFK

Q9ZVQ6 F-box protein PP2-B102.0e-0554.55Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRC
        RF +VA+L++V W EI G+   R LSPRT Y+ Y VFK V D+C
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRC

Q9ZVR5 Putative F-box protein PP2-B22.9e-0452.63Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFK
        RF EV EL NV W E+ G +  + LSP T Y+ Y VFK
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFK

Arabidopsis top hitse value%identityAlignment
AT1G80110.1 phloem protein 2-B111.3e-0766.67Show/hide
Query:  LLNHRFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFK
        L N RF EVAEL  VWWLEI GKI    LS  T YA YFVFK
Subjt:  LLNHRFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFK

AT2G02230.1 phloem protein 2-B17.2e-0651.16Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDR
        +F +VAEL+NV W E+ GKI    LS  T+Y+VY VFK    R
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDR

AT2G02240.1 F-box family protein5.0e-0756.82Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRC
        RF ++AEL +V W EI GK  AR LSP T Y+ Y VFK  +DRC
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRC

AT2G02250.1 phloem protein 2-B22.1e-0552.63Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFK
        RF EV EL NV W E+ G +  + LSP T Y+ Y VFK
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFK

AT2G02360.1 phloem protein 2-B101.4e-0654.55Show/hide
Query:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRC
        RF +VA+L++V W EI G+   R LSPRT Y+ Y VFK V D+C
Subjt:  RFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACTAACATTATTACGAGACAATTACATTATAGTGCTCAGTTCGTATGACGAATTTAAACTTTTAAACCACAGGTTTCCTGAAGTGGCTGAGTTGCAAAATGTATG
GTGGCTTGAGATCTATGGAAAAATAGAAGCTAGAAATTTAAGTCCCCGAACCAACTACGCAGTTTACTTTGTGTTCAAGCTCGTAGAAGACCGTTGTGAATTCAACGAGA
GACCAGTTTTATTAGAAGTTTTGACCCTCCTCAAAGAACCTTTATGGCTTCTAAAGAAAGAGCCGACGGATGGATGGAGATTGAAATGGGTGAAATCTTCAATGAATTCG
ACGGCTCAATTGTTTTCCATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAACTAACATTATTACGAGACAATTACATTATAGTGCTCAGTTCGTATGACGAATTTAAACTTTTAAACCACAGGTTTCCTGAAGTGGCTGAGTTGCAAAATGTATG
GTGGCTTGAGATCTATGGAAAAATAGAAGCTAGAAATTTAAGTCCCCGAACCAACTACGCAGTTTACTTTGTGTTCAAGCTCGTAGAAGACCGTTGTGAATTCAACGAGA
GACCAGTTTTATTAGAAGTTTTGACCCTCCTCAAAGAACCTTTATGGCTTCTAAAGAAAGAGCCGACGGATGGATGGAGATTGAAATGGGTGAAATCTTCAATGAATTCG
ACGGCTCAATTGTTTTCCATTTAA
Protein sequenceShow/hide protein sequence
MKLTLLRDNYIIVLSSYDEFKLLNHRFPEVAELQNVWWLEIYGKIEARNLSPRTNYAVYFVFKLVEDRCEFNERPVLLEVLTLLKEPLWLLKKEPTDGWRLKWVKSSMNS
TAQLFSI