CuGenDBv2

Gene ID	CmoCh14G019380
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	Cmo_Chr14:14348941..14350639
RNA-Seq Expression	CmoCh14G019380
Synteny	CmoCh14G019380
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0005737 - cytoplasm (cellular component) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0043229 - intracellular organelle (cellular component) GO:0016168 - chlorophyll binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF0925994.1 hypothetical protein E2562_019937, partial [Oryza meyeriana var. granulata]

5.4e-08

88.57

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVAL
        MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV L
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVAL

PUZ60530.1 hypothetical protein GQ55_4G138100 [Panicum hallii var. hallii]

4.2e-08

72.34

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVALELVNRPNYKLLD
        MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV      RP  ++LD
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVALELVNRPNYKLLD

PVH47815.1 hypothetical protein PAHAL_4G159600 [Panicum hallii]

4.2e-08

72.34

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVALELVNRPNYKLLD
        MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV      RP  ++LD
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVALELVNRPNYKLLD

QID03116.1 photosystem II 44 kDa protein [Paphiopedilum malipoense]

1.2e-07

93.94

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV
        MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV

YP_009193232.1 photosystem II 44 kDa protein [Gnetum ula]

1.2e-07

93.94

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV
        MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV

TrEMBL top hits

e value

%identity

Alignment

A0A2T7DY71 Uncharacterized protein

2.0e-08

72.34

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVALELVNRPNYKLLD
        MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV      RP  ++LD
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVALELVNRPNYKLLD

A0A2T8JD40 Uncharacterized protein

2.0e-08

72.34

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVALELVNRPNYKLLD
        MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV      RP  ++LD
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVALELVNRPNYKLLD

A0A452XE48 Uncharacterized protein

2.6e-08

58.82

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVALELVNRPNYKLLDFRTSKIGNAGVDPSFWCFLRL
        MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV     +R    L  +RTS        P+F   LRL
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVALELVNRPNYKLLDFRTSKIGNAGVDPSFWCFLRL

A0A452XE76 Uncharacterized protein

2.6e-08

58.82

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVALELVNRPNYKLLDFRTSKIGNAGVDPSFWCFLRL
        MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV     +R    L  +RTS        P+F   LRL
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVALELVNRPNYKLLDFRTSKIGNAGVDPSFWCFLRL

A0A6G1EMZ3 Uncharacterized protein (Fragment)

2.6e-08

88.57

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVAL
        MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV L
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVAL

SwissProt top hits

e value

%identity

Alignment

A6BM30 Photosystem II CP43 reaction center protein

1.6e-10

93.94

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV
        MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV

A9LYI1 Photosystem II CP43 reaction center protein

2.1e-10

90.91

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV
        MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV

B2Y1U6 Photosystem II CP43 reaction center protein

1.6e-10

93.94

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV
        MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV

Q3V538 Photosystem II CP43 reaction center protein

2.1e-10

90.91

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV
        MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV

Q8HB52 Photosystem II CP43 reaction center protein

2.1e-10

90.91

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV
        MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

1.5e-11

90.91

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Query:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV
        MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV
Subjt:  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV

Sequences

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CDS sequence

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ATGAACCTATTCGAAGTGGCTCATTTCATACCTGAGAAACCCATGTATGAACAAGAATTAATTTTACTTCCCCTCCTAGCTACTCTAGGTTGGGGCGTAGCCCTAGAACT
TGTTAATCGACCGAATTACAAGCTCCTTGATTTTAGGACTTCGAAGATTGGTAATGCGGGCGTTGATCCGTCTTTTTGGTGTTTTTTAAGGCTGTAG

mRNA sequence

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Protein sequence

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MNLFEVAHFIPEKPMYEQELILLPLLATLGWGVALELVNRPNYKLLDFRTSKIGNAGVDPSFWCFLRL

CmoCh14G019380 (gene) of Cucurbita moschata (Rifu) v1 genome