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CmoCh14G019890 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G019890
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description10 kDa chaperonin 1, chloroplastic-like
Genome locationCmo_Chr14:14615763..14618090
RNA-Seq ExpressionCmoCh14G019890
SyntenyCmoCh14G019890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582514.1 10 kDa chaperonin 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.1e-2673.27Show/hide
Query:  MPPFELFIHGDASTFVTVPKPFINTANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVYSFVLSSAL
        MPPFELFIHGDASTFVTV KPFINTANSPSVSA RRV                        IGGLRRS FKVRAVSKKREPAKVVPQADRVYSFVLSSAL
Subjt:  MPPFELFIHGDASTFVTVPKPFINTANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVYSFVLSSAL

Query:  R
        R
Subjt:  R

KAG7028719.1 10 kDa chaperonin 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-1640.85Show/hide
Query:  ASTFVTVPKPFINTANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRV--------------------
        ASTFVTVPKPF + ANS SVS+R+++ GTL ++                   G RRS+ KV AVSKK EP KVVPQADRV                    
Subjt:  ASTFVTVPKPFINTANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRV--------------------

Query:  --------YSFVLSSALRIG----CPKSSWLKK-----SGHRLDLGTDSKHCFCKAGDLLAVVE
                   +LS    +G     P    +K      + + +DLGTD+KHCFCKA DLLAVVE
Subjt:  --------YSFVLSSALRIG----CPKSSWLKK-----SGHRLDLGTDSKHCFCKAGDLLAVVE

XP_008438275.1 PREDICTED: 10 kDa chaperonin isoform X1 [Cucumis melo]2.3e-1642.59Show/hide
Query:  ASTFVTVPKPFINTAN-SPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRV-------------------
        ASTF+TVPKPFIN  N SPSVSARR +                        IGGLR S  KV A+S+K EPAKVVPQADRV                   
Subjt:  ASTFVTVPKPFINTAN-SPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRV-------------------

Query:  ---------YSFVLSSALRIGCPKSSWLKK------SGHRLDLGTDSKHCFCKAGDLLAVVE
                    +LS    +G    +  KK      + + +DLGTD+KHCFCKAGDLLAVVE
Subjt:  ---------YSFVLSSALRIGCPKSSWLKK------SGHRLDLGTDSKHCFCKAGDLLAVVE

XP_022924292.1 10 kDa chaperonin 1, chloroplastic-like [Cucurbita moschata]3.0e-3277.36Show/hide
Query:  MDFQTGMPPFELFIHGDASTFVTVPKPFINTANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVYSF
        MDFQTGMPPFELFIHGDASTFVTVPKPFINTANSPSVSARRRV                        IGGLRRSAFKVRAVSKKREPAKVVPQADRVYSF
Subjt:  MDFQTGMPPFELFIHGDASTFVTVPKPFINTANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVYSF

Query:  VLSSAL
        VLSSAL
Subjt:  VLSSAL

XP_038880425.1 10 kDa chaperonin 1, chloroplastic-like [Benincasa hispida]2.3e-1641.61Show/hide
Query:  ASTFVTVPKPFINTANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVY-------------------
        ASTFVTVPK  IN  NSPSVSARR +                        IGGLR S  KV A+SKK EPAKVVPQADRV                    
Subjt:  ASTFVTVPKPFINTANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVY-------------------

Query:  -----SFVLSSALRIGC----------PKSSWLKKSGHRLDLGTDSKHCFCKAGDLLAVVE
              +++   L +G            K      + + +DLGTD+KHCFCKAGDLLAVVE
Subjt:  -----SFVLSSALRIGC----------PKSSWLKKSGHRLDLGTDSKHCFCKAGDLLAVVE

TrEMBL top hitse value%identityAlignment
A0A0A0L6L9 Uncharacterized protein2.5e-1641.98Show/hide
Query:  ASTFVTVPKPFINTAN-SPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRV-------------------
        ASTF TVPKPFINT N SPSVS RR +                         GGLR S  KV A+SKK EPAKVVPQADRV                   
Subjt:  ASTFVTVPKPFINTAN-SPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRV-------------------

Query:  ---------YSFVLSSALRIGCPKSSWLKK------SGHRLDLGTDSKHCFCKAGDLLAVVE
                    +LS    +G    +  KK      + + +DLGTD+KHCFCKAGDLLA+VE
Subjt:  ---------YSFVLSSALRIGCPKSSWLKK------SGHRLDLGTDSKHCFCKAGDLLAVVE

A0A1S3AWL8 10 kDa chaperonin isoform X11.1e-1642.59Show/hide
Query:  ASTFVTVPKPFINTAN-SPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRV-------------------
        ASTF+TVPKPFIN  N SPSVSARR +                        IGGLR S  KV A+S+K EPAKVVPQADRV                   
Subjt:  ASTFVTVPKPFINTAN-SPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRV-------------------

Query:  ---------YSFVLSSALRIGCPKSSWLKK------SGHRLDLGTDSKHCFCKAGDLLAVVE
                    +LS    +G    +  KK      + + +DLGTD+KHCFCKAGDLLAVVE
Subjt:  ---------YSFVLSSALRIGCPKSSWLKK------SGHRLDLGTDSKHCFCKAGDLLAVVE

A0A5D3CZW2 10 kDa chaperonin isoform X11.1e-1642.59Show/hide
Query:  ASTFVTVPKPFINTAN-SPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRV-------------------
        ASTF+TVPKPFIN  N SPSVSARR +                        IGGLR S  KV A+S+K EPAKVVPQADRV                   
Subjt:  ASTFVTVPKPFINTAN-SPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRV-------------------

Query:  ---------YSFVLSSALRIGCPKSSWLKK------SGHRLDLGTDSKHCFCKAGDLLAVVE
                    +LS    +G    +  KK      + + +DLGTD+KHCFCKAGDLLAVVE
Subjt:  ---------YSFVLSSALRIGCPKSSWLKK------SGHRLDLGTDSKHCFCKAGDLLAVVE

A0A6J1D0Y0 10 kDa chaperonin 1, chloroplastic-like2.1e-1541.61Show/hide
Query:  ASTFVTVPKPFINTANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVY----SFVLSSALRIGCPKS
        AS+FVTVPKPF++ ANSPSVS+ R+                           GL+RS+ KV AVSKK +PAKVVPQADRV          SA  +  PKS
Subjt:  ASTFVTVPKPFINTANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVY----SFVLSSALRIGCPKS

Query:  SWL------------------------KK------SGHRLDLGTDSKHCFCKAGDLLAVVE
        +                          KK      + + +DLGTD+KHCFCKAGDLLAVVE
Subjt:  SWL------------------------KK------SGHRLDLGTDSKHCFCKAGDLLAVVE

A0A6J1E8H4 10 kDa chaperonin 1, chloroplastic-like1.5e-3277.36Show/hide
Query:  MDFQTGMPPFELFIHGDASTFVTVPKPFINTANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVYSF
        MDFQTGMPPFELFIHGDASTFVTVPKPFINTANSPSVSARRRV                        IGGLRRSAFKVRAVSKKREPAKVVPQADRVYSF
Subjt:  MDFQTGMPPFELFIHGDASTFVTVPKPFINTANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVYSF

Query:  VLSSAL
        VLSSAL
Subjt:  VLSSAL

SwissProt top hitse value%identityAlignment
O80504 10 kDa chaperonin 2, chloroplastic2.4e-0834.26Show/hide
Query:  GLRRSAFKVRAVSKKREPAKVVPQADRVY----SFVLSSALRIGCPKSS-----------------------------WLKKSGHRLDLGTDSKHCFCKA
        G RR   +++A+S K EP KVVPQADRV        + S+  +  PK++                             +   S + +DLGTD++HCFCK 
Subjt:  GLRRSAFKVRAVSKKREPAKVVPQADRVY----SFVLSSALRIGCPKSS-----------------------------WLKKSGHRLDLGTDSKHCFCKA

Query:  GDLLAVVE
         DLLA+VE
Subjt:  GDLLAVVE

Q9M1C2 10 kDa chaperonin 1, chloroplastic2.6e-1031.29Show/hide
Query:  ASTFVTVPKPFIN---TANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVY----------------
        AS+F+TVPKPF++     N+P++  +     TL+                     G+RR++F++ AVS K EPAKVVPQADRV                 
Subjt:  ASTFVTVPKPFIN---TANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVY----------------

Query:  --------SFVLSSALRIGC--------PKSSWLKKSGHRLDLGT-DSKHCFCKAGDLLAVVE
                 ++    + +G          K  +   S + +D GT D+KHCFCK  DLLA+V+
Subjt:  --------SFVLSSALRIGC--------PKSSWLKKSGHRLDLGT-DSKHCFCKAGDLLAVVE

Arabidopsis top hitse value%identityAlignment
AT2G44650.1 chloroplast chaperonin 101.7e-0934.26Show/hide
Query:  GLRRSAFKVRAVSKKREPAKVVPQADRVY----SFVLSSALRIGCPKSS-----------------------------WLKKSGHRLDLGTDSKHCFCKA
        G RR   +++A+S K EP KVVPQADRV        + S+  +  PK++                             +   S + +DLGTD++HCFCK 
Subjt:  GLRRSAFKVRAVSKKREPAKVVPQADRVY----SFVLSSALRIGCPKSS-----------------------------WLKKSGHRLDLGTDSKHCFCKA

Query:  GDLLAVVE
         DLLA+VE
Subjt:  GDLLAVVE

AT3G60210.1 GroES-like family protein1.8e-1131.29Show/hide
Query:  ASTFVTVPKPFIN---TANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVY----------------
        AS+F+TVPKPF++     N+P++  +     TL+                     G+RR++F++ AVS K EPAKVVPQADRV                 
Subjt:  ASTFVTVPKPFIN---TANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVY----------------

Query:  --------SFVLSSALRIGC--------PKSSWLKKSGHRLDLGT-DSKHCFCKAGDLLAVVE
                 ++    + +G          K  +   S + +D GT D+KHCFCK  DLLA+V+
Subjt:  --------SFVLSSALRIGC--------PKSSWLKKSGHRLDLGT-DSKHCFCKAGDLLAVVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTTCAAACGGGTATGCCGCCGTTTGAACTTTTTATTCATGGCGATGCCTCTACGTTCGTCACAGTGCCAAAGCCCTTTATCAACACGGCTAATTCACCTTCCGT
ATCTGCACGGCGACGAGTAATCGGTACGCTGATAAGTAAATCCGTTGATAGACTGTCGCATTTTCTTTTCTCGATCAATTTCTGTCGCGCTATCGGAGGACTGCGAAGAA
GCGCTTTCAAAGTCCGCGCAGTTTCTAAGAAACGGGAGCCTGCGAAGGTGGTTCCTCAAGCTGATAGAGTATACTCGTTCGTCTTGAGTAGCGCCCTGAGAATTGGATGT
CCAAAAAGTTCTTGGCTCAAAAAATCTGGTCATAGGCTGGATTTGGGCACAGATTCTAAGCACTGTTTCTGCAAAGCTGGTGATTTGTTAGCTGTGGTTGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTTTCAAACGGGTATGCCGCCGTTTGAACTTTTTATTCATGGCGATGCCTCTACGTTCGTCACAGTGCCAAAGCCCTTTATCAACACGGCTAATTCACCTTCCGT
ATCTGCACGGCGACGAGTAATCGGTACGCTGATAAGTAAATCCGTTGATAGACTGTCGCATTTTCTTTTCTCGATCAATTTCTGTCGCGCTATCGGAGGACTGCGAAGAA
GCGCTTTCAAAGTCCGCGCAGTTTCTAAGAAACGGGAGCCTGCGAAGGTGGTTCCTCAAGCTGATAGAGTATACTCGTTCGTCTTGAGTAGCGCCCTGAGAATTGGATGT
CCAAAAAGTTCTTGGCTCAAAAAATCTGGTCATAGGCTGGATTTGGGCACAGATTCTAAGCACTGTTTCTGCAAAGCTGGTGATTTGTTAGCTGTGGTTGAGTAGAGAAG
CTTCCTCCAACACTACAATCAGATCAACATCAGATATCTTCACTCAGATTAGTTCTCTTCCCTGATTCTCATTTGCTTGTTGCTTCTGCAATATCTGATCTTTGTTTTTT
GTCTTTATTGCTCTGTGTGATCCGTATAAAGATATCAGTTCTTCTCATTAGGAAAAATACCTTAAATTATATTTTAAAAATTACTCAACCTTCAAAACAAAGCTGAAGAA
CATCAAGAATAAATGATTTTTTTTTATACTTTTTTTCCCTAGAGAATGTAAAACCCTTTTCAAATAAATGAATAATTTTG
Protein sequenceShow/hide protein sequence
MDFQTGMPPFELFIHGDASTFVTVPKPFINTANSPSVSARRRVIGTLISKSVDRLSHFLFSINFCRAIGGLRRSAFKVRAVSKKREPAKVVPQADRVYSFVLSSALRIGC
PKSSWLKKSGHRLDLGTDSKHCFCKAGDLLAVVE