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CmoCh14G020140 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G020140
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionlate embryogenesis abundant protein 6-like
Genome locationCmo_Chr14:14751046..14754193
RNA-Seq ExpressionCmoCh14G020140
SyntenyCmoCh14G020140
Gene Ontology termsGO:0009793 - embryo development ending in seed dormancy (biological process)
InterPro domainsIPR005513 - Late embryogenesis abundant protein, LEA_1 subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134355.1 late embryogenesis abundant protein 6 [Cucumis sativus]6.9e-3577.87Show/hide
Query:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTT----NVATAPGVT
        MQAVR+KLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG +AEKEMAK+A+ HTN FV+PG GTTT    +V  APG+T
Subjt:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTT----NVATAPGVT

Query:  MVGAPGTVDMAG-PHTVHKKTL
        MVGAPGTVDMAG P  V+KK L
Subjt:  MVGAPGTVDMAG-PHTVHKKTL

XP_022924652.1 late embryogenesis abundant protein 6-like [Cucurbita moschata]1.1e-51100Show/hide
Query:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA
        MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA
Subjt:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA

Query:  PGTVDMAGPHTVHKKTL
        PGTVDMAGPHTVHKKTL
Subjt:  PGTVDMAGPHTVHKKTL

XP_022980446.1 late embryogenesis abundant protein 6-like [Cucurbita maxima]3.1e-5199.15Show/hide
Query:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA
        MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA
Subjt:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA

Query:  PGTVDMAGPHTVHKKTL
        PGTVDM GPHTVHKKTL
Subjt:  PGTVDMAGPHTVHKKTL

XP_023526292.1 late embryogenesis abundant protein 6-like isoform X1 [Cucurbita pepo subsp. pepo]4.4e-5097.44Show/hide
Query:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA
        MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHAN HTNIFVAPGDGTTT VATAPGVTMVGA
Subjt:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA

Query:  PGTVDMAGPHTVHKKTL
        PGTVDM GPHTVHKKTL
Subjt:  PGTVDMAGPHTVHKKTL

XP_023526293.1 late embryogenesis abundant protein 6-like isoform X2 [Cucurbita pepo subsp. pepo]4.4e-5097.44Show/hide
Query:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA
        MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHAN HTNIFVAPGDGTTT VATAPGVTMVGA
Subjt:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA

Query:  PGTVDMAGPHTVHKKTL
        PGTVDM GPHTVHKKTL
Subjt:  PGTVDMAGPHTVHKKTL

TrEMBL top hitse value%identityAlignment
A0A0A0L6I7 Uncharacterized protein3.3e-3577.87Show/hide
Query:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTT----NVATAPGVT
        MQAVR+KLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG +AEKEMAK+A+ HTN FV+PG GTTT    +V  APG+T
Subjt:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTT----NVATAPGVT

Query:  MVGAPGTVDMAG-PHTVHKKTL
        MVGAPGTVDMAG P  V+KK L
Subjt:  MVGAPGTVDMAG-PHTVHKKTL

A0A1S3AWI7 uncharacterized protein LOC1034833971.7e-3475.81Show/hide
Query:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTT------NVATAPG
        MQAV++KLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG +AEKEMAK+A+ HTN FVAPG GT T      NV  APG
Subjt:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTT------NVATAPG

Query:  VTMVGAPGTVDMAG-PHTVHKKTL
        +TMVGAPGTVDMAG P   +KK L
Subjt:  VTMVGAPGTVDMAG-PHTVHKKTL

A0A5A7U624 Late embryogenesis abundant protein1.7e-3475.81Show/hide
Query:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTT------NVATAPG
        MQAV++KLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG +AEKEMAK+A+ HTN FVAPG GT T      NV  APG
Subjt:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTT------NVATAPG

Query:  VTMVGAPGTVDMAG-PHTVHKKTL
        +TMVGAPGTVDMAG P   +KK L
Subjt:  VTMVGAPGTVDMAG-PHTVHKKTL

A0A6J1ED39 late embryogenesis abundant protein 6-like5.1e-52100Show/hide
Query:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA
        MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA
Subjt:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA

Query:  PGTVDMAGPHTVHKKTL
        PGTVDMAGPHTVHKKTL
Subjt:  PGTVDMAGPHTVHKKTL

A0A6J1IRE5 late embryogenesis abundant protein 6-like1.5e-5199.15Show/hide
Query:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA
        MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA
Subjt:  MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGA

Query:  PGTVDMAGPHTVHKKTL
        PGTVDM GPHTVHKKTL
Subjt:  PGTVDMAGPHTVHKKTL

SwissProt top hitse value%identityAlignment
Q39138 Late embryogenesis abundant protein 67.7e-0543.04Show/hide
Query:  MQAVRDKLHDITAMRKAK---SEAKAEEKAEKELA--KARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAH
        MQ+ + K+ D+ +  K K    +AKA+EKAE+ +A  K   E+AH+ R A+EAEA M +H+AKA    +K MAK ++ H
Subjt:  MQAVRDKLHDITAMRKAK---SEAKAEEKAEKELA--KARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAH

Arabidopsis top hitse value%identityAlignment
AT1G32560.1 Late embryogenesis abundant protein, group 1 protein5.5e-0643.04Show/hide
Query:  MQAVRDKLHDITAMRKAK---SEAKAEEKAEKELA--KARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAH
        MQ+ + K+ D+ +  K K    +AKA+EKAE+ +A  K   E+AH+ R A+EAEA M +H+AKA    +K MAK ++ H
Subjt:  MQAVRDKLHDITAMRKAK---SEAKAEEKAEKELA--KARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGCAGTAAGGGACAAGCTACACGACATCACCGCCATGCGGAAGGCCAAGTCCGAGGCAAAGGCCGAAGAGAAGGCAGAGAAGGAGCTAGCAAAGGCAAGAGTGGA
GGTGGCTCATGAGGTAAGATTGGCAAGAGAGGCTGAAGCTGCAATGAGTCTTCATGTTGCCAAAGCTGGAAAGAGGGCTGAGAAAGAAATGGCTAAGCATGCCAATGCTC
ACACCAATATCTTTGTGGCTCCTGGCGACGGCACCACCACCAACGTGGCCACCGCTCCAGGCGTGACTATGGTCGGAGCCCCTGGCACCGTCGACATGGCTGGACCTCAT
ACCGTTCATAAGAAGACACTGTAA
mRNA sequenceShow/hide mRNA sequence
CTGTTGAGTGAGGCGTAGATACACCGACTGTCGAGAAGAGCTAGTGATCGGCAGCCATAACGACGGCGTCGGAGTGCGATTTTGGAGAGGGAGAGTTTCGGGCGTGCTGT
GGAAGCTCCGAATTCGCCGGAGAAATGGTATCCGCTTCGCGCTTTTCCTCCTTGGAATAAGCTGCAGGGTCAATCAGCCATTTCAAAGAAACTAGCTTCAGTTTTTACAA
GTCCAAAAGACAAAGATGCAAGCAGTAAGGGACAAGCTACACGACATCACCGCCATGCGGAAGGCCAAGTCCGAGGCAAAGGCCGAAGAGAAGGCAGAGAAGGAGCTAGC
AAAGGCAAGAGTGGAGGTGGCTCATGAGGTAAGATTGGCAAGAGAGGCTGAAGCTGCAATGAGTCTTCATGTTGCCAAAGCTGGAAAGAGGGCTGAGAAAGAAATGGCTA
AGCATGCCAATGCTCACACCAATATCTTTGTGGCTCCTGGCGACGGCACCACCACCAACGTGGCCACCGCTCCAGGCGTGACTATGGTCGGAGCCCCTGGCACCGTCGAC
ATGGCTGGACCTCATACCGTTCATAAGAAGACACTGTAACTCTTGTAACGCCATCAAAAAGCTGGTCATCTTTCATTTGCAAGTAATTACCTTTGTGTTTGATTTGTTTT
TCTACAAGTTCTACCACATCTTTAGATGTTGTGTAGTATACATACAAAAGAATGTAACATTGTATTCCGAGACCGTTCATAACAAGAAATCGAAGTATTTAAAGATATTA
ATCTGTCACTAACTTCTGAGACTTATGAGAGTGATCCGCTGAAATTCCACATTAACTATATTTTC
Protein sequenceShow/hide protein sequence
MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAGKRAEKEMAKHANAHTNIFVAPGDGTTTNVATAPGVTMVGAPGTVDMAGPH
TVHKKTL