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CmoCh14G021910 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G021910
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerase II subunit 1-like
Genome locationCmo_Chr14:15646958..15647506
RNA-Seq ExpressionCmoCh14G021910
SyntenyCmoCh14G021910
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582689.1 hypothetical protein SDJN03_22691, partial [Cucurbita argyrosperma subsp. sororia]1.9e-7999.38Show/hide
Query:  SASRSEVRASTALTELEAFSSAPTTTDILRTSLPPPPSSPKYSGKPASPRSESVSGKSQQKQLQSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESE
        +ASRSEVRASTALTELEAFSSAPTTTDILRTSLPPPPSSPKYSGKPASPRSESVSGKSQQKQLQSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESE
Subjt:  SASRSEVRASTALTELEAFSSAPTTTDILRTSLPPPPSSPKYSGKPASPRSESVSGKSQQKQLQSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESE

Query:  EKEEKWSWNLYSSWAPFINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPLHDSTH
        EKEEKWSWNLYSSWAPFINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPLHDSTH
Subjt:  EKEEKWSWNLYSSWAPFINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPLHDSTH

XP_022945677.1 DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata]2.2e-2736.72Show/hide
Query:  MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTS---------------LPPPPSSPKYSG--------KPASP-------
        MANLPRFGR+W R SSLPRPG+A R +V    A +E E + SAP T ++L+TS                P PP+SPKY          KP SP       
Subjt:  MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTS---------------LPPPPSSPKYSG--------KPASP-------

Query:  ---------------------------------------------------------------------------------------RSESVSGKSQQKQ
                                                                                                SE  SGK QQKQ
Subjt:  ---------------------------------------------------------------------------------------RSESVSGKSQQKQ

Query:  L---QSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESEEKEEKWSWNLYSSWAP---FINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPL
            QSD IN++GENVGAVMHITQSSDA +  KKK       + EK S N  SS  P   F+N+NFQ VNNS++Y+SSL+HRDPGLHLAF+  P H D +
Subjt:  L---QSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESEEKEEKWSWNLYSSWAP---FINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPL

Query:  HDSTH
        HDS H
Subjt:  HDSTH

XP_022974814.1 DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima]1.3e-2737.05Show/hide
Query:  MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTS---------------LPPPPSSPKYSG--------KPASP-------
        MANLPRFGR+W R SSLPRP +A R +V    A +E E FSSAP T ++L+TS                P PP+SPKY          KP SP       
Subjt:  MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTS---------------LPPPPSSPKYSG--------KPASP-------

Query:  ---------------------------------------------------------------------------------------RSESVSGKSQQKQ
                                                                                                SE  SGK QQKQ
Subjt:  ---------------------------------------------------------------------------------------RSESVSGKSQQKQ

Query:  L---QSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESEEKEEKWSWNLYSSWAP---FINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPL
            QSD IN++GENVGAVMHITQSSDA +  KKK       + EK S N  SS  P   F+N+NFQ VNNS++Y+SSL+HRDPGLHLAF+  P H D +
Subjt:  L---QSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESEEKEEKWSWNLYSSWAP---FINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPL

Query:  HDSTH
        HDS H
Subjt:  HDSTH

XP_023521993.1 uncharacterized protein LOC111785865 [Cucurbita pepo subsp. pepo]1.2e-3351.22Show/hide
Query:  MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTS--------LPPPPSSPKY------SGKPASP---RSESVSGKSQQKQ
        MANLPRFGR+W R SSLPRPG+A R +V    A +E E +   P T ++L+TS        +P P            S KPA      SE  SGK QQKQ
Subjt:  MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTS--------LPPPPSSPKY------SGKPASP---RSESVSGKSQQKQ

Query:  L---QSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESEEKEEKWSWNLYSSWAP---FINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPL
            QSD IN++GENVGAVMHITQSSDA +  KKK       + EK S N  SS  P   F+N+NFQ VNNS++Y+SSL+HRDPGLHLAF+  P H D +
Subjt:  L---QSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESEEKEEKWSWNLYSSWAP---FINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPL

Query:  HDSTH
        HDS H
Subjt:  HDSTH

XP_038904572.1 pollen-specific leucine-rich repeat extensin-like protein 1 [Benincasa hispida]1.4e-2937.01Show/hide
Query:  MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTS---------------LPPPPSSPKYS-------GKPASP--------
        M+NLPRFGR+W R SSLPRP SA R E++  T  TE E     PTT ++L+TS                P PPSSPKY         KP SP        
Subjt:  MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTS---------------LPPPPSSPKYS-------GKPASP--------

Query:  ----------------------------------------------------------------------------------------RSESVSGK----
                                                                                                + E +SGK    
Subjt:  ----------------------------------------------------------------------------------------RSESVSGK----

Query:  ----SQQKQLQSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESEEKEEKWSWNLYSSWAPFINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHG
             QQ+QLQSD IN++GENVGAVMHITQSSD  +I KKK  KE+EEK  K + N  +    F+N+NFQ VNNS++Y+SSL+HRDPGLHLA+S  PNHG
Subjt:  ----SQQKQLQSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESEEKEEKWSWNLYSSWAPFINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHG

Query:  DPLHDSTH
        D LHDS H
Subjt:  DPLHDSTH

TrEMBL top hitse value%identityAlignment
A0A1S3AVJ6 microtubule-associated protein RP/EB family member 1-like3.0e-2736.98Show/hide
Query:  MANLPRFGRSWPRLSSLPRPGSASRSEVR-ASTALTELEAFSSAPTTTDILRTS---------------LPPPPSSPKYSG--------KPASPRS----
        M+NLPRFGR+W R SSLPRP +A+R E + A TA TE E F SA  TT+ L+TS                P PPSSPKYSG        KP SP S    
Subjt:  MANLPRFGRSWPRLSSLPRPGSASRSEVR-ASTALTELEAFSSAPTTTDILRTS---------------LPPPPSSPKYSG--------KPASPRS----

Query:  --------------------------------------------------------------------------------------------ESVSGKSQ
                                                                                                    +  + K Q
Subjt:  --------------------------------------------------------------------------------------------ESVSGKSQ

Query:  QK----QLQSDDINMEGENVGAVMHITQSSDALQIQKKK----QRKESEEKEEKWSWNLYSSWAPFINTNFQSVNNSLMYSSSLTHRDPGLHLAFSN-TP
        QK    QLQSD IN++G+NVGAVMHITQSSD  +I KKK    Q KE+EEK  K + N       F+N+NFQ VNNS++Y+SSL+HRDPGLHLA+S+  P
Subjt:  QK----QLQSDDINMEGENVGAVMHITQSSDALQIQKKK----QRKESEEKEEKWSWNLYSSWAPFINTNFQSVNNSLMYSSSLTHRDPGLHLAFSN-TP

Query:  NHGDPLHDSTH
         HGD +H+S H
Subjt:  NHGDPLHDSTH

A0A5A7TZ60 Microtubule-associated protein RP/EB family member 1-like3.0e-2736.98Show/hide
Query:  MANLPRFGRSWPRLSSLPRPGSASRSEVR-ASTALTELEAFSSAPTTTDILRTS---------------LPPPPSSPKYSG--------KPASPRS----
        M+NLPRFGR+W R SSLPRP +A+R E + A TA TE E F SA  TT+ L+TS                P PPSSPKYSG        KP SP S    
Subjt:  MANLPRFGRSWPRLSSLPRPGSASRSEVR-ASTALTELEAFSSAPTTTDILRTS---------------LPPPPSSPKYSG--------KPASPRS----

Query:  --------------------------------------------------------------------------------------------ESVSGKSQ
                                                                                                    +  + K Q
Subjt:  --------------------------------------------------------------------------------------------ESVSGKSQ

Query:  QK----QLQSDDINMEGENVGAVMHITQSSDALQIQKKK----QRKESEEKEEKWSWNLYSSWAPFINTNFQSVNNSLMYSSSLTHRDPGLHLAFSN-TP
        QK    QLQSD IN++G+NVGAVMHITQSSD  +I KKK    Q KE+EEK  K + N       F+N+NFQ VNNS++Y+SSL+HRDPGLHLA+S+  P
Subjt:  QK----QLQSDDINMEGENVGAVMHITQSSDALQIQKKK----QRKESEEKEEKWSWNLYSSWAPFINTNFQSVNNSLMYSSSLTHRDPGLHLAFSN-TP

Query:  NHGDPLHDSTH
         HGD +H+S H
Subjt:  NHGDPLHDSTH

A0A6J1G1L2 DNA-directed RNA polymerase II subunit 1-like1.0e-2736.72Show/hide
Query:  MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTS---------------LPPPPSSPKYSG--------KPASP-------
        MANLPRFGR+W R SSLPRPG+A R +V    A +E E + SAP T ++L+TS                P PP+SPKY          KP SP       
Subjt:  MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTS---------------LPPPPSSPKYSG--------KPASP-------

Query:  ---------------------------------------------------------------------------------------RSESVSGKSQQKQ
                                                                                                SE  SGK QQKQ
Subjt:  ---------------------------------------------------------------------------------------RSESVSGKSQQKQ

Query:  L---QSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESEEKEEKWSWNLYSSWAP---FINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPL
            QSD IN++GENVGAVMHITQSSDA +  KKK       + EK S N  SS  P   F+N+NFQ VNNS++Y+SSL+HRDPGLHLAF+  P H D +
Subjt:  L---QSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESEEKEEKWSWNLYSSWAP---FINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPL

Query:  HDSTH
        HDS H
Subjt:  HDSTH

A0A6J1IEX0 DNA-directed RNA polymerase II subunit 1-like isoform X26.1e-2837.05Show/hide
Query:  MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTS---------------LPPPPSSPKYSG--------KPASP-------
        MANLPRFGR+W R SSLPRP +A R +V    A +E E FSSAP T ++L+TS                P PP+SPKY          KP SP       
Subjt:  MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTS---------------LPPPPSSPKYSG--------KPASP-------

Query:  ---------------------------------------------------------------------------------------RSESVSGKSQQKQ
                                                                                                SE  SGK QQKQ
Subjt:  ---------------------------------------------------------------------------------------RSESVSGKSQQKQ

Query:  L---QSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESEEKEEKWSWNLYSSWAP---FINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPL
            QSD IN++GENVGAVMHITQSSDA +  KKK       + EK S N  SS  P   F+N+NFQ VNNS++Y+SSL+HRDPGLHLAF+  P H D +
Subjt:  L---QSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESEEKEEKWSWNLYSSWAP---FINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPL

Query:  HDSTH
        HDS H
Subjt:  HDSTH

A0A6J1IHF4 DNA-directed RNA polymerase II subunit 1-like isoform X16.8e-2736.39Show/hide
Query:  MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTS-------------------------------------LPPPPSSPKY
        MANLPRFGR+W R SSLPRP +A R +V    A +E E FSSAP T ++L+TS                                     L PPP+  +Y
Subjt:  MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTS-------------------------------------LPPPPSSPKY

Query:  SG--------------------------------------------------------KPASP------------------------RSESVSGKSQQKQ
         G                                                        +P SP                         SE  SGK QQKQ
Subjt:  SG--------------------------------------------------------KPASP------------------------RSESVSGKSQQKQ

Query:  L---QSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESEEKEEKWSWNLYSSWAP---FINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPL
            QSD IN++GENVGAVMHITQSSDA +  KKK       + EK S N  SS  P   F+N+NFQ VNNS++Y+SSL+HRDPGLHLAF+  P H D +
Subjt:  L---QSDDINMEGENVGAVMHITQSSDALQIQKKKQRKESEEKEEKWSWNLYSSWAP---FINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPL

Query:  HDSTH
        HDS H
Subjt:  HDSTH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G46630.1 unknown protein6.1e-0427.81Show/hide
Query:  KYSGKPASPRSESVSGKSQQKQLQSDDINMEGENVGAVMHITQSSDA-----------------------LQIQKKKQRKESEEKEE-------KWSWNL
        K   +P+S  SE++        + +  I + GEN GAVM I +S                          LQ        E E K++       K + NL
Subjt:  KYSGKPASPRSESVSGKSQQKQLQSDDINMEGENVGAVMHITQSSDA-----------------------LQIQKKKQRKESEEKEE-------KWSWNL

Query:  YSSWAPFINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPLHDSTH
              F+N+N Q +NNS++Y+S+ +H DPG+HL  S  P   +  H S +
Subjt:  YSSWAPFINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPLHDSTH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAATCTTCCTCGTTTTGGCCGTTCATGGCCACGCCTCTCATCTTTACCTCGCCCTGGCAGTGCCTCACGATCTGAAGTTCGAGCGTCGACGGCGCTCACAGAGCT
AGAAGCCTTTTCCTCTGCTCCCACCACCACTGATATTCTTCGAACTTCTCTGCCGCCGCCGCCTTCGTCTCCTAAATATAGCGGCAAGCCAGCATCTCCTCGGAGTGAGA
GCGTCTCCGGCAAGAGCCAGCAGAAGCAGCTTCAAAGTGACGACATAAACATGGAAGGGGAGAACGTGGGCGCCGTCATGCACATCACTCAATCATCCGATGCCCTACAA
ATCCAGAAGAAAAAGCAGAGAAAGGAAAGCGAAGAGAAAGAGGAGAAATGGAGTTGGAATTTGTACAGTTCGTGGGCGCCGTTCATCAACACCAATTTTCAAAGTGTCAA
CAATTCCCTTATGTACAGTTCGTCTTTAACCCACCGTGATCCAGGCCTGCACCTTGCTTTCTCCAACACCCCCAACCATGGCGATCCTCTTCATGATTCAACCCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAATCTTCCTCGTTTTGGCCGTTCATGGCCACGCCTCTCATCTTTACCTCGCCCTGGCAGTGCCTCACGATCTGAAGTTCGAGCGTCGACGGCGCTCACAGAGCT
AGAAGCCTTTTCCTCTGCTCCCACCACCACTGATATTCTTCGAACTTCTCTGCCGCCGCCGCCTTCGTCTCCTAAATATAGCGGCAAGCCAGCATCTCCTCGGAGTGAGA
GCGTCTCCGGCAAGAGCCAGCAGAAGCAGCTTCAAAGTGACGACATAAACATGGAAGGGGAGAACGTGGGCGCCGTCATGCACATCACTCAATCATCCGATGCCCTACAA
ATCCAGAAGAAAAAGCAGAGAAAGGAAAGCGAAGAGAAAGAGGAGAAATGGAGTTGGAATTTGTACAGTTCGTGGGCGCCGTTCATCAACACCAATTTTCAAAGTGTCAA
CAATTCCCTTATGTACAGTTCGTCTTTAACCCACCGTGATCCAGGCCTGCACCTTGCTTTCTCCAACACCCCCAACCATGGCGATCCTCTTCATGATTCAACCCACTAA
Protein sequenceShow/hide protein sequence
MANLPRFGRSWPRLSSLPRPGSASRSEVRASTALTELEAFSSAPTTTDILRTSLPPPPSSPKYSGKPASPRSESVSGKSQQKQLQSDDINMEGENVGAVMHITQSSDALQ
IQKKKQRKESEEKEEKWSWNLYSSWAPFINTNFQSVNNSLMYSSSLTHRDPGLHLAFSNTPNHGDPLHDSTH