CuGenDBv2

Gene ID	CmoCh15G001760
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S26
Genome location	Cmo_Chr15:805944..807849
RNA-Seq Expression	CmoCh15G001760
Synteny	CmoCh15G001760
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000892 - Ribosomal protein S26e IPR038551 - Ribosomal protein S26e superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6602587.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]

3.9e-63

96.09

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAPP
        FIRRR+D PKPGQPG APRVGAG GAPP
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAPP

XP_008456772.1 PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo]

5.1e-63

96.15

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR R+PPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA
        FIRRR+DAPKPGQPGQ PRVGAG GAPPRA
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA

XP_022923523.1 40S ribosomal protein S26-3-like [Cucurbita moschata]

7.8e-64

96.88

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAPP
        FIRRR+D PKPGQPGQAPRVGAG GAPP
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAPP

XP_022939944.1 40S ribosomal protein S26-3-like [Cucurbita moschata]

4.4e-67

100

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA
        FIRRREDAPKPGQPGQAPRVGAGPGAPPRA
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA

XP_038884330.1 40S ribosomal protein S26-3-like [Benincasa hispida]

1.0e-63

96.92

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR R+PPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA
        FIRRR+DAPKPGQPGQAPRVGAG GAPPRA
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UA01 40S ribosomal protein S26

2.5e-63

96.15

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR R+PPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA
        FIRRR+DAPKPGQPGQ PRVGAG GAPPRA
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA

A0A6J1E9V7 40S ribosomal protein S26

3.8e-64

96.88

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAPP
        FIRRR+D PKPGQPGQAPRVGAG GAPP
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAPP

A0A6J1FIL8 40S ribosomal protein S26

2.2e-67

100

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA
        FIRRREDAPKPGQPGQAPRVGAGPGAPPRA
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA

A0A6J1JRW7 40S ribosomal protein S26

3.8e-64

96.88

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAPP
        FIRRR+D PKPGQPGQAPRVGAG GAPP
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAPP

A0A6J1K0V7 40S ribosomal protein S26

2.2e-67

100

Show/hide

Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA
        FIRRREDAPKPGQPGQAPRVGAGPGAPPRA
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA

SwissProt top hits

e value

%identity

Alignment

O45499 40S ribosomal protein S26

3.4e-38

67.8

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y QY LPKLY K+ YC++CAIHS VVR RSR  RR R+PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAP
        F  +R  A +PG PG  P
Subjt:  FIRRREDAPKPGQPGQAP

P49206 40S ribosomal protein S26-1

9.0e-55

85.71

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGA
        F RR+ED PKPGQPGQAPR  AGPGA
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGA

P49216 40S ribosomal protein S26

2.4e-47

74.8

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR R PP+R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAP
        F RRRED P+  +PG       G  AP
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAP

Q8LPJ7 40S ribosomal protein S26-2

2.6e-54

83.85

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA
        F RR+ED PKPGQPGQAPR  AGPGA   A
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA

Q9LYK9 40S ribosomal protein S26-3

5.3e-55

83.08

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA
        F RR+ED PKP QPGQAPR   G  A PRA
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA

Arabidopsis top hits

e value

%identity

Alignment

AT2G40510.1 Ribosomal protein S26e family protein

1.9e-55

83.85

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA
        F RR+ED PKPGQPGQAPR  AGPGA   A
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA

AT2G40590.1 Ribosomal protein S26e family protein

6.4e-56

85.71

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGA
        F RR+ED PKPGQPGQAPR  AGPGA
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGA

AT3G56340.1 Ribosomal protein S26e family protein

3.8e-56

83.08

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA
        F RR+ED PKP QPGQAPR   G  A PRA
Subjt:  FIRRREDAPKPGQPGQAPRVGAGPGAPPRA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACTTTCAAGCGTAGGAATGGTGGACGCAACAAGCACGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGAAAATGCTGCCCCAAGGACAAGGCC
ATCAAAAGGTTCCTTGTTAGGAACATTGTGGAGCAGGCAGCTGTTAGAGATGTTCAGGAAGCCTGTGTCTATGATCAATACACTCTTCCTAAGCTATATGCCAAG
ATGCAGTACTGTGTTTCTTGTGCAATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGG
GAAGATGCACCAAAGCCTGGACAGCCAGGACAGGCTCCCCGCGTTGGAGCTGGCCCTGGAGCTCCACCCCGTGCTTGA

mRNA sequence

Show/hide mRNA sequence

CTCTTCATATAAAAGGATCACTACCACCAATTCATAAACCCTATTTCAGCCGACGAGCTCTCTGATTCTCTCTGGTTCGCTCGGTCATCTGTGACACTAGAGCTA
TGACTTTCAAGCGTAGGAATGGTGGACGCAACAAGCACGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGAAAATGCTGCCCCAAGGACAAGGCCA
TCAAAAGGTTCCTTGTTAGGAACATTGTGGAGCAGGCAGCTGTTAGAGATGTTCAGGAAGCCTGTGTCTATGATCAATACACTCTTCCTAAGCTATATGCCAAGA
TGCAGTACTGTGTTTCTTGTGCAATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGGG
AAGATGCACCAAAGCCTGGACAGCCAGGACAGGCTCCCCGCGTTGGAGCTGGCCCTGGAGCTCCACCCCGTGCTTGAAGGAACGTCTTACTTGCTATTTAATTTT
CTCATGGTTTCCCAAATTTCGCGGACTTCAATTTTATTAGGTTTTTCAAAATAGTTTGAGGCTTTGTTTCGAGTATCAAATTATGTTCTACTGTTGAATTCTGAT
TAATTTTTGGTTGAACGGGGTCTACTTGAACATTTTTAATGTTTTTGTCATGGCTCAATTATCTATCATTCCTATCTCGCATCTCTTTTTTACTTCTAATTCAGA
ATTCTTAAATTCATTCAGGGTTTGAGAGAAAAAAAATGAAAGGGAAAACATGTATGTCGTAGCAATATCCAATGTTCAGATGGGTGCTTTGTGAGAGCTCCGCAC
TTCGCATAATTTAAAGCTATCAC

Protein sequence

Show/hide protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
EDAPKPGQPGQAPRVGAGPGAPPRA

CmoCh15G001760 (gene) of Cucurbita moschata (Rifu) v1 genome