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CmoCh15G002860 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G002860
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionribonuclease DdI-like
Genome locationCmo_Chr15:1348716..1349024
RNA-Seq ExpressionCmoCh15G002860
SyntenyCmoCh15G002860
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578584.1 Ribonuclease DdI, partial [Cucurbita argyrosperma subsp. sororia]2.7e-4390.1Show/hide
Query:  MANKNTFFLLLTILILNVLKEYALDGIALVESKDSSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCNDSEFLQQN
        MANKNTFFLLLTILILNVLK Y LD IA +ES DSSNELEEMKAV FDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQC+ SEFLQQN
Subjt:  MANKNTFFLLLTILILNVLKEYALDGIALVESKDSSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCNDSEFLQQN

Query:  V
        +
Subjt:  V

KAG7016138.1 Ribonuclease DdI, partial [Cucurbita argyrosperma subsp. argyrosperma]7.8e-3591.76Show/hide
Query:  MANKNTFFLLLTILILNVLKEYALDGIALVESKDSSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYS
        MANKNTFFLLLTILILNVLK Y LD IA +ES DSSNELEEMKAV FDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYS
Subjt:  MANKNTFFLLLTILILNVLKEYALDGIALVESKDSSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYS

XP_004148696.1 ribonuclease DdI [Cucumis sativus]1.6e-2764.22Show/hide
Query:  MMANKNTFFLLLTILILNVLKEYALDG----IALVESKD---SSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCN
        +MA K + F+LL IL+LN+L   AL+G    IA  ESK+   S   LE MK VPFDYYQLVLQWQPATCSN  CL+PWSSRFSINGLWA SYSR IG+C 
Subjt:  MMANKNTFFLLLTILILNVLKEYALDG----IALVESKD---SSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCN

Query:  DSEFLQQNV
         + FLQQN+
Subjt:  DSEFLQQNV

XP_022993666.1 ribonuclease DdI-like [Cucurbita maxima]2.4e-3985.15Show/hide
Query:  MANKNTFFLLLTILILNVLKEYALDGIALVESKDSSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCNDSEFLQQN
        MANKNTFFLLLTILILNVLK YA+       S DSSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYS SIG+C+ SEFLQQN
Subjt:  MANKNTFFLLLTILILNVLKEYALDGIALVESKDSSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCNDSEFLQQN

Query:  V
        +
Subjt:  V

XP_023551239.1 ribonuclease DdI-like [Cucurbita pepo subsp. pepo]1.2e-4390.1Show/hide
Query:  MANKNTFFLLLTILILNVLKEYALDGIALVESKDSSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCNDSEFLQQN
        MAN+NTFFLLLTILILNVLK YAL+GIA VES DS NELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYS SIG+CN SEFLQQN
Subjt:  MANKNTFFLLLTILILNVLKEYALDGIALVESKDSSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCNDSEFLQQN

Query:  V
        +
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A0A0KS79 Uncharacterized protein6.7e-2465.96Show/hide
Query:  ILNVLKEYALDG----IALVESKD---SSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCNDSEFLQQNV
        +LN+L   AL+G    IA  ESK+   S   LE MK VPFDYYQLVLQWQPATCSN  CL+PWSSRFSINGLWA SYSR IG+C  + FLQQN+
Subjt:  ILNVLKEYALDG----IALVESKD---SSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCNDSEFLQQNV

A0A5A7TE29 Ribonuclease DdI-like1.1e-2164.13Show/hide
Query:  ILILNVLKEYALDGIALVESKD---SSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCNDSEFLQQNV
        +LI + L E   D I  +E K+   S N+LE MK +PFDYYQLVLQWQPATCS   CL+P+SSRFSINGLWAGSYSR IG+C  S FL+QNV
Subjt:  ILILNVLKEYALDGIALVESKD---SSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCNDSEFLQQNV

A0A6J1DYI5 ribonuclease MC-like1.4e-0549.09Show/hide
Query:  FDYYQLVLQWQPATCSNLT----CLKPWSSRFSINGLWAGSYSRS-IGQCNDSEF
        FDYYQ+V QWQPATC+++T    C++   +RFSI+G+W    S S +G CN + F
Subjt:  FDYYQLVLQWQPATCSNLT----CLKPWSSRFSINGLWAGSYSRS-IGQCNDSEF

A0A6J1E0X1 ribonuclease MC-like1.2e-0448Show/hide
Query:  FDYYQLVLQWQPATCSNLT----CLKPWSSRFSINGLWAGSYSRSIGQCN
        FDYYQ+VLQWQPATCS+ T    C++P   R+S++G+W    S  +  C+
Subjt:  FDYYQLVLQWQPATCSNLT----CLKPWSSRFSINGLWAGSYSRSIGQCN

A0A6J1JWY7 ribonuclease DdI-like1.1e-3985.15Show/hide
Query:  MANKNTFFLLLTILILNVLKEYALDGIALVESKDSSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCNDSEFLQQN
        MANKNTFFLLLTILILNVLK YA+       S DSSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYS SIG+C+ SEFLQQN
Subjt:  MANKNTFFLLLTILILNVLKEYALDGIALVESKDSSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCNDSEFLQQN

Query:  V
        +
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCAAACAAGAACACTTTCTTCCTTCTCCTAACCATTTTGATTTTGAATGTTTTGAAAGAGTATGCTTTGGATGGCATAGCTTTGGTGGAATCAAAGGATAGTTC
AAATGAGTTGGAAGAGATGAAAGCAGTTCCGTTCGATTATTATCAACTCGTACTGCAATGGCAACCAGCAACGTGCAGCAATCTCACCTGTCTGAAACCTTGGTCGTCGA
GGTTCAGCATCAACGGTCTATGGGCTGGCAGCTATTCTCGTAGCATTGGACAGTGCAATGACAGCGAATTTCTTCAACAAAACGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGCAAACAAGAACACTTTCTTCCTTCTCCTAACCATTTTGATTTTGAATGTTTTGAAAGAGTATGCTTTGGATGGCATAGCTTTGGTGGAATCAAAGGATAGTTC
AAATGAGTTGGAAGAGATGAAAGCAGTTCCGTTCGATTATTATCAACTCGTACTGCAATGGCAACCAGCAACGTGCAGCAATCTCACCTGTCTGAAACCTTGGTCGTCGA
GGTTCAGCATCAACGGTCTATGGGCTGGCAGCTATTCTCGTAGCATTGGACAGTGCAATGACAGCGAATTTCTTCAACAAAACGTATGA
Protein sequenceShow/hide protein sequence
MMANKNTFFLLLTILILNVLKEYALDGIALVESKDSSNELEEMKAVPFDYYQLVLQWQPATCSNLTCLKPWSSRFSINGLWAGSYSRSIGQCNDSEFLQQNV