CuGenDBv2

Gene ID	CmoCh15G002940
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Transcription factor protein
Genome location	Cmo_Chr15:1385105..1386008
RNA-Seq Expression	CmoCh15G002940
Synteny	CmoCh15G002940
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0040008 - regulation of growth (biological process) GO:0005634 - nucleus (cellular component) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain IPR036638 - Helix-loop-helix DNA-binding domain superfamily IPR044293 - Transcription factor PRE

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7016144.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]

3.6e-39

98.9

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Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

XP_004151201.2 transcription factor PRE6 [Cucumis sativus]

6.3e-36

93.41

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Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

XP_022939473.1 transcription factor PRE6-like [Cucurbita moschata]

9.4e-40

100

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Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

XP_022993701.1 transcription factor PRE6-like [Cucurbita maxima]

1.0e-38

97.8

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Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSTRRSRHSG SRISDDQII+LLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

XP_038890645.1 LOW QUALITY PROTEIN: transcription factor PRE6 [Benincasa hispida]

3.1e-35

91.21

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Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MS+RRSR S ASRI+DDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXB9 Transcription regulator

3.1e-36

93.41

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Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

A0A1S3CB29 transcription factor PRE6

3.1e-36

93.41

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Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

A0A5A7T970 Transcription factor PRE6

3.1e-36

93.41

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Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

A0A6J1FLR3 transcription factor PRE6-like

4.6e-40

100

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Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

A0A6J1JX29 transcription factor PRE6-like

5.0e-39

97.8

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Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSTRRSRHSG SRISDDQII+LLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

SwissProt top hits

e value

%identity

Alignment

B8APB5 Transcription factor ILI6

4.0e-25

67.39

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Query:  MSTR--RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM
        MS+R  RSR SG+SRI+D+QI DL+SKL+ L+PE R R  D+V +S+VL ETCNYIR+LH+EVDDLSERLS+LL+T D  SA+AAIIRSL+M
Subjt:  MSTR--RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM

Q0DUR2 Transcription factor ILI6

4.0e-25

67.39

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Query:  MSTR--RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM
        MS+R  RSR SG+SRI+D+QI DL+SKL+ L+PE R R  D+V +S+VL ETCNYIR+LH+EVDDLSERLS+LL+T D  SA+AAIIRSL+M
Subjt:  MSTR--RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM

Q8GW32 Transcription factor PRE6

1.6e-29

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Query:  MSTR---RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLI
        MS+R   RSR SG+SRISDDQI DL+SKL+ L+PE+R RR DKVSASKVL ETCNYIRNLHREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Subjt:  MSTR---RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLI

Q9FLE9 Transcription factor PRE1

4.3e-27

72.83

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Query:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM
        MS RRSR  S A RISD+Q+IDL+SKLRQ++PEI + RR DK SASKVL ETCNYIRNL+REVD+LSERLSQLL ++D DS EAA+IRSL+M
Subjt:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM

Q9LJX1 Transcription factor PRE5

3.9e-28

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Query:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM
        MS RRSR  S ASRISDDQ+IDL+SKLRQ +PEI   RR DKVSASKVL ETCNYIR LHREVD+LS+RLSQLL ++D DS EAA+IRSL+M
Subjt:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM

Arabidopsis top hits

e value

%identity

Alignment

AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

1.1e-30

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Query:  MSTR---RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLI
        MS+R   RSR SG+SRISDDQI DL+SKL+ L+PE+R RR DKVSASKVL ETCNYIRNLHREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Subjt:  MSTR---RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLI

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1

1.4e-25

68.42

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Query:  MSTRRSR---HSGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MS RRSR    SG SRIS+DQI DL+ KL+QL+PE+R  RR DKVSA++VL +TCNYIRNLHREVDDLSERLS+LL+  +SD+A+AA+IRSL+ Q
Subjt:  MSTRRSR---HSGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein

2.7e-29

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Query:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM
        MS RRSR  S ASRISDDQ+IDL+SKLRQ +PEI   RR DKVSASKVL ETCNYIR LHREVD+LS+RLSQLL ++D DS EAA+IRSL+M
Subjt:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM

AT5G15160.1 BANQUO 2

8.3e-26

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Query:  STRRSRH-SGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLI
        S+RRSR  S +SRISDDQI DL+SKLRQ +PEIR +RR + VSASKVL ETCNYIRNL++E DDLS+RL+QLL +ID +S +AA+IRSLI
Subjt:  STRRSRH-SGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLI

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein

3.0e-28

72.83

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Query:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM
        MS RRSR  S A RISD+Q+IDL+SKLRQ++PEI + RR DK SASKVL ETCNYIRNL+REVD+LSERLSQLL ++D DS EAA+IRSL+M
Subjt:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM

Sequences

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CDS sequence

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ATGTCCACCAGAAGATCAAGGCACTCAGGCGCTTCAAGAATCAGCGATGACCAAATCATCGACCTCCTCTCCAAGCTCCGTCAACTCGTCCCCGAGATTCGCCACCGCCG
CCCCGACAAGGTATCAGCTTCAAAAGTCCTCCATGAAACCTGCAATTACATTAGAAACTTGCATAGGGAGGTGGATGACCTAAGTGAAAGACTCTCTCAGCTCTTATCTA
CAATAGATTCTGATAGCGCCGAGGCAGCCATCATCAGGAGCTTAATTATGCAATAG

mRNA sequence

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ATCACTTCCCTTCCATTCCTTCAAACCCAACACCTTTTCTACTCCAACTGCCTCTCCATCTTCAACTCCACATAACCTTCAACCTCACTCACCAAAATGTCCACCAGAAG
ATCAAGGCACTCAGGCGCTTCAAGAATCAGCGATGACCAAATCATCGACCTCCTCTCCAAGCTCCGTCAACTCGTCCCCGAGATTCGCCACCGCCGCCCCGACAAGGTAT
CAGCTTCAAAAGTCCTCCATGAAACCTGCAATTACATTAGAAACTTGCATAGGGAGGTGGATGACCTAAGTGAAAGACTCTCTCAGCTCTTATCTACAATAGATTCTGAT
AGCGCCGAGGCAGCCATCATCAGGAGCTTAATTATGCAATAGAACAAGAACAAGAACAAGAACAACCGTGTCGGGTTTGGTATTGATATATATATATATATATCTATATT
ATTCTTATTTATATCGGATTTGATGTTACTATGTTATTTATATGGGTCTTTTTATATTCCCTTTTCTAGGTTTTTGGTCGCTTAGATCAAAAAATGGGTGTATTTTCCAT
GAAAAGAGAGACGTCCCTTTATTATTATTATTATTATTATATATATAGGGATGTAACCCAAATGTATAACAGAAGTTAATTGTAAAAATACACCCAAAAAATGAATATCT
AATTAGCTTATAAAAATGCAGCATTTGCAGG

Protein sequence

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MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

CmoCh15G002940 (gene) of Cucurbita moschata (Rifu) v1 genome