CuGenDBv2

Gene ID	CmoCh15G002970
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Translation factor GUF1 homolog, mitochondrial
Genome location	Cmo_Chr15:1399382..1400258
RNA-Seq Expression	CmoCh15G002970
Synteny	CmoCh15G002970
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0016020 - membrane (cellular component) GO:0005525 - GTP binding (molecular function)
InterPro domains	IPR006297 - Elongation factor 4 IPR009000 - Translation protein, beta-barrel domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008459300.1 PREDICTED: translation factor GUF1 homolog, mitochondrial isoform X1 [Cucumis melo]

3.6e-32

60.69

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLLLD Y+DEYKGVICHVAVVDGV RKGDKISS ATG AYEVLDVGIMHPELTSTGILLT QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF
                ADGSDFDALNHAIERLTCNDASVSV     TALGL F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF

XP_011655991.1 translation factor GUF1 homolog, mitochondrial isoform X2 [Cucumis sativus]

3.6e-32

60.69

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLLLD Y+DEYKGVICHVAVVDGV RKGDKISS ATG AYEVLDVGIMHPELTSTGILLT QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF
                ADGSDFDALNHAIERLTCNDASVSV     TALGL F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF

XP_022991182.1 translation factor GUF1 homolog, mitochondrial isoform X1 [Cucurbita maxima]

3.6e-32

60.69

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLLLD Y+DEYKGVICHVAVVDGV RKGDKISS ATG AYEVLDVGIMHPELTSTGILLT QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF
                ADGSDFDALNHAIERLTCNDASVSV     TALGL F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF

XP_023553579.1 translation factor GUF1 homolog, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo]

3.6e-32

60.69

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLLLD Y+DEYKGVICHVAVVDGV RKGDKISS ATG AYEVLDVGIMHPELTSTGILLT QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF
                ADGSDFDALNHAIERLTCNDASVSV     TALGL F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF

XP_023553581.1 translation factor GUF1 homolog, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo]

3.6e-32

60.69

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLLLD Y+DEYKGVICHVAVVDGV RKGDKISS ATG AYEVLDVGIMHPELTSTGILLT QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF
                ADGSDFDALNHAIERLTCNDASVSV     TALGL F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C9C6 Translation factor GUF1 homolog, mitochondrial

1.7e-32

60.69

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLLLD Y+DEYKGVICHVAVVDGV RKGDKISS ATG AYEVLDVGIMHPELTSTGILLT QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF
                ADGSDFDALNHAIERLTCNDASVSV     TALGL F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF

A0A5D3CYM9 Translation factor GUF1 homolog, mitochondrial

1.7e-32

60.69

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLLLD Y+DEYKGVICHVAVVDGV RKGDKISS ATG AYEVLDVGIMHPELTSTGILLT QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF
                ADGSDFDALNHAIERLTCNDASVSV     TALGL F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF

A0A6J1HK65 Translation factor GUF1 homolog, mitochondrial

1.7e-32

60.69

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLLLD Y+DEYKGVICHVAVVDGV RKGDKISS ATG AYEVLDVGIMHPELTSTGILLT QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF
                ADGSDFDALNHAIERLTCNDASVSV     TALGL F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF

A0A6J1JL24 Translation factor GUF1 homolog, mitochondrial

1.7e-32

60.69

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLLLD Y+DEYKGVICHVAVVDGV RKGDKISS ATG AYEVLDVGIMHPELTSTGILLT QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF
                ADGSDFDALNHAIERLTCNDASVSV     TALGL F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF

A0A6J1JU42 Translation factor GUF1 homolog, mitochondrial

1.7e-32

60.69

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLLLD Y+DEYKGVICHVAVVDGV RKGDKISS ATG AYEVLDVGIMHPELTSTGILLT QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF
                ADGSDFDALNHAIERLTCNDASVSV     TALGL F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF

SwissProt top hits

e value

%identity

Alignment

B8B2R1 Translation factor GUF1 homolog, mitochondrial

9.1e-31

53.79

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLLLD Y+DEYKGVICHVAVVDG   KGDKI+S ATG  YEVLDVGIMHPELT TG+L T QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF
                ADGSDFDAL+HAIE+LTCNDASVSV     TALG+ F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF

B9RUN8 Translation factor GUF1 homolog, mitochondrial

4.0e-34

57.93

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLLLD Y+DEYKGVICHVAVVDG+ RKGDKISS ATGH+YE+LDVG MHPELT TGILLT QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSVT-----ALGLDF
                ADGSDFDALNHAIERLTCNDASVSVT     ALGL F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSVT-----ALGLDF

C5Z3W1 Translation factor GUF1 homolog, mitochondrial

2.0e-30

52.41

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLLLD Y+DEYKGVICHVA+VDG  RKGDKI+S ATG AYEVLDVGIMHPEL  TG+L T QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSVT-----ALGLDF
                ADGSDF+AL+HAIE+LTCNDASVS+T     ALG+ F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSVT-----ALGLDF

Q5VQ69 Translation factor GUF1 homolog, mitochondrial

9.1e-31

53.79

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLLLD Y+DEYKGVICHVAVVDG   KGDKI+S ATG  YEVLDVGIMHPELT TG+L T QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF
                ADGSDFDAL+HAIE+LTCNDASVSV     TALG+ F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF

Q9FLE4 Translation factor GUF1 homolog, mitochondrial

4.7e-27

48.97

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLL D + +EYKGVIC+V+VVDG+  KGDK+S  A+G +YEVLDVGIMHPELTSTG+LLT QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF
                ADGSDF+AL HA+E+LTCNDASVSV     TALG+ F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF

Arabidopsis top hits

e value

%identity

Alignment

AT5G08650.1 Small GTP-binding protein

1.6e-06

37.1

Show/hide

Query:  LLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV
        L+ D Y+D Y+GVI +  V+DG  +KGD+I  +A+G  Y   +VG++ P       L   +V
Subjt:  LLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV

AT5G39900.1 Small GTP-binding protein

3.3e-28

48.97

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Query:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------
        MLL D + +EYKGVIC+V+VVDG+  KGDK+S  A+G +YEVLDVGIMHPELTSTG+LLT QV                                     
Subjt:  MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQV-------------------------------------

Query:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF
                ADGSDF+AL HA+E+LTCNDASVSV     TALG+ F
Subjt:  --------ADGSDFDALNHAIERLTCNDASVSV-----TALGLDF

Sequences

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CDS sequence

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ATGCTTTTATTAGATTTGTACCATGATGAATACAAGGGAGTGATATGCCATGTTGCTGTTGTTGATGGTGTGCGGCGCAAGGGGGATAAGATTTCTTCCGTAGCC
ACTGGTCATGCTTATGAAGTCTTGGATGTTGGGATCATGCATCCCGAACTTACCAGTACAGGGATCCTTCTTACCAGTCAAGTGGCTGACGGGTCAGATTTTGAT
GCACTCAACCATGCAATAGAGAGACTTACATGTAATGATGCCAGCGTCTCTGTAACAGCATTAGGGCTTGATTTTAGTCAAAGGCATTTATGA

mRNA sequence

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Protein sequence

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MLLLDLYHDEYKGVICHVAVVDGVRRKGDKISSVATGHAYEVLDVGIMHPELTSTGILLTSQVADGSDFDALNHAIERLTCNDASVSVTALGLDFSQRHL

CmoCh15G002970 (gene) of Cucurbita moschata (Rifu) v1 genome