CuGenDBv2

Gene ID	CmoCh15G003080
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	RNA methyltransferase, RsmD
Genome location	Cmo_Chr15:1444749..1445600
RNA-Seq Expression	CmoCh15G003080
Synteny	CmoCh15G003080
Gene Ontology terms	GO:0032259 - methylation (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0008168 - methyltransferase activity (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022993553.1 uncharacterized protein LOC111489523 isoform X1 [Cucurbita maxima]

2.5e-40

100

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Query:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
        GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
Subjt:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK

XP_022993555.1 uncharacterized protein LOC111489523 isoform X2 [Cucurbita maxima]

2.5e-40

100

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Query:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
        GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
Subjt:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK

XP_022993558.1 putative rRNA methyltransferase YlbH isoform X4 [Cucurbita maxima]

2.5e-40

100

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Query:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
        GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
Subjt:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK

XP_023549922.1 uncharacterized protein LOC111808272 isoform X2 [Cucurbita pepo subsp. pepo]

2.5e-40

100

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Query:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
        GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
Subjt:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK

XP_023549923.1 uncharacterized protein LOC111808272 isoform X3 [Cucurbita pepo subsp. pepo]

2.5e-40

100

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Query:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
        GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
Subjt:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FJ81 uncharacterized protein LOC111444763 isoform X1

1.2e-40

100

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Query:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
        GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
Subjt:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK

A0A6J1JWM9 uncharacterized protein LOC111489523 isoform X3

1.2e-40

100

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Query:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
        GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
Subjt:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK

A0A6J1JYU7 uncharacterized protein LOC111489523 isoform X2

1.2e-40

100

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Query:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
        GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
Subjt:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK

A0A6J1K2L1 uncharacterized protein LOC111489523 isoform X1

1.2e-40

100

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Query:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
        GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
Subjt:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK

A0A6J1K2L6 putative rRNA methyltransferase YlbH isoform X4

1.2e-40

100

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Query:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
        GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK
Subjt:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G28460.1 methyltransferases

4.7e-29

67.07

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Query:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKR
        G D  FDYISVTPPY++VDY V+M+Q++KS  +GE+TFI+VEYP +T MLDSCGCL ++T RRFGRT LAIYGPKWA+K ++
Subjt:  GNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKR

Sequences

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CDS sequence

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ATGGTACTGGAACCAATTTCTTATGGTAATGATAGACCATTTGATTACATTAGTGTTACCCCACCGTACATACAAGTTGATTATGGGGTAGTCATGGAGCAACTATCAAA
GTCAGCCTTAGTTGGAGAAGATACCTTCATCGTTGTTGAATATCCATTGAAGACTGACATGCTGGATTCGTGTGGATGCCTTATTCAGATTACTAAGCGACGGTTTGGTC
GGACAGTCTTGGCGATTTATGGACCCAAGTGGGCTGAGAAGGAAAAAAGAAAAAAATAA

mRNA sequence

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Protein sequence

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MVLEPISYGNDRPFDYISVTPPYIQVDYGVVMEQLSKSALVGEDTFIVVEYPLKTDMLDSCGCLIQITKRRFGRTVLAIYGPKWAEKEKRKK

CmoCh15G003080 (gene) of Cucurbita moschata (Rifu) v1 genome