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CmoCh15G003230 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G003230
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionmetalloendoproteinase 3-MMP-like
Genome locationCmo_Chr15:1497127..1497535
RNA-Seq ExpressionCmoCh15G003230
SyntenyCmoCh15G003230
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0031012 - extracellular matrix (cellular component)
GO:0004222 - metalloendopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001818 - Peptidase M10, metallopeptidase
IPR006026 - Peptidase, metallopeptidase
IPR021190 - Peptidase M10A
IPR024079 - Metallopeptidase, catalytic domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037452.1 metalloendoproteinase 3-MMP-like [Cucumis melo var. makuwa]2.1e-3152.74Show/hide
Query:  LTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF---------------------------------LRYDLESVA
        LTYGFIHNYPPEH   V+RAF+TWEANT FTFS +ARVQTAD L S E+   G G PF                                   +D+ESVA
Subjt:  LTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF---------------------------------LRYDLESVA

Query:  LHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
        LHEIGHALGLGH+    AVMW  M+ G  KT L  DDI GIHALYG
Subjt:  LHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

KAG6578620.1 Metalloendoproteinase 3-MMP, partial [Cucurbita argyrosperma subsp. sororia]4.5e-4285.42Show/hide
Query:  MRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPFLRYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
        MRAFETWEANTHFTFSQSARVQTAD LFSLEKETWGRGVPFLRYDLESVALHEIGHALGL H++++DAVMWP MNFG +KT LHDDD+N I A+YG
Subjt:  MRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPFLRYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

XP_008458911.1 PREDICTED: metalloendoproteinase 3-MMP-like [Cucumis melo]2.1e-3152.74Show/hide
Query:  LTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF---------------------------------LRYDLESVA
        LTYGFIHNYPPEH   V+RAF+TWEANT FTFS +ARVQTAD L S E+   G G PF                                   +D+ESVA
Subjt:  LTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF---------------------------------LRYDLESVA

Query:  LHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
        LHEIGHALGLGH+    AVMW  M+ G  KT L  DDI GIHALYG
Subjt:  LHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

XP_022939136.1 metalloendoproteinase 1-like [Cucurbita moschata]2.6e-3454.36Show/hide
Query:  MGQLTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEK--------------------------------ETWGRGVPFLRYDLES
        +G+ T  FI+NYPP+ VG VMRAF TWEA+T+FTFSQSARVQTAD   S E+                                + W  GV  L+ DLES
Subjt:  MGQLTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEK--------------------------------ETWGRGVPFLRYDLES

Query:  VALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYGN
        VALHEIGHALGLGHT VQDAVMWP +NFG  KT LH DDINGI A++G+
Subjt:  VALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYGN

XP_023551530.1 metalloendoproteinase 5-MMP-like [Cucurbita pepo subsp. pepo]1.9e-4060.96Show/hide
Query:  LTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEK--------------------------------ETWGRGVPFLRYDLESVAL
        LTYGFIH+YP ++V  VMRAF TWEANTHFTFSQ+   QTAD + S E+                                E W  G+  L+ DLESVAL
Subjt:  LTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEK--------------------------------ETWGRGVPFLRYDLESVAL

Query:  HEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYGN
        HEIGHALGLGHT VQDAVMWPTMNFGSRKTRLHDDDINGIHALYGN
Subjt:  HEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYGN

TrEMBL top hitse value%identityAlignment
A0A1S3C8Z2 metalloendoproteinase 3-MMP-like1.0e-3152.74Show/hide
Query:  LTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF---------------------------------LRYDLESVA
        LTYGFIHNYPPEH   V+RAF+TWEANT FTFS +ARVQTAD L S E+   G G PF                                   +D+ESVA
Subjt:  LTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF---------------------------------LRYDLESVA

Query:  LHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
        LHEIGHALGLGH+    AVMW  M+ G  KT L  DDI GIHALYG
Subjt:  LHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

A0A1S3C9J1 metalloendoproteinase 3-MMP-like9.7e-2748.28Show/hide
Query:  LTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEK--------------------------------ETWGRGVPFLRYDLESVAL
        L+YGFIHN+PP+HV  V+RAF+TWE NT F+F  + RVQTAD L S E+                                E W  G    RYDLE++AL
Subjt:  LTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEK--------------------------------ETWGRGVPFLRYDLESVAL

Query:  HEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
        HE+GHALGLGH+    AVMW  M  G  KTRL  DDI GI ALYG
Subjt:  HEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

A0A5D3BRA5 Metalloendoproteinase 3-MMP-like9.7e-2748.28Show/hide
Query:  LTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEK--------------------------------ETWGRGVPFLRYDLESVAL
        L+YGFIHN+PP+HV  V+RAF+TWE NT F+F  + RVQTAD L S E+                                E W  G    RYDLE++AL
Subjt:  LTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEK--------------------------------ETWGRGVPFLRYDLESVAL

Query:  HEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
        HE+GHALGLGH+    AVMW  M  G  KTRL  DDI GI ALYG
Subjt:  HEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

A0A5D3BUL7 Metalloendoproteinase 3-MMP-like1.0e-3152.74Show/hide
Query:  LTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF---------------------------------LRYDLESVA
        LTYGFIHNYPPEH   V+RAF+TWEANT FTFS +ARVQTAD L S E+   G G PF                                   +D+ESVA
Subjt:  LTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF---------------------------------LRYDLESVA

Query:  LHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
        LHEIGHALGLGH+    AVMW  M+ G  KT L  DDI GIHALYG
Subjt:  LHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

A0A6J1FF28 metalloendoproteinase 1-like1.3e-3454.36Show/hide
Query:  MGQLTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEK--------------------------------ETWGRGVPFLRYDLES
        +G+ T  FI+NYPP+ VG VMRAF TWEA+T+FTFSQSARVQTAD   S E+                                + W  GV  L+ DLES
Subjt:  MGQLTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEK--------------------------------ETWGRGVPFLRYDLES

Query:  VALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYGN
        VALHEIGHALGLGHT VQDAVMWP +NFG  KT LH DDINGI A++G+
Subjt:  VALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYGN

SwissProt top hitse value%identityAlignment
O04529 Metalloendoproteinase 2-MMP2.6e-1333.77Show/hide
Query:  LTYGFIHNYP-PEHVGPVM-RAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF---------------------------------------L
        LTY F    P  E V  V  RAF  W   T   F+ S    T+D          G G PF                                        
Subjt:  LTYGFIHNYP-PEHVGPVM-RAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF---------------------------------------L

Query:  RYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
          DLESVA+HEIGH LGLGH+ V++++M+PT+  G RK  L +DD+ GI  LYG
Subjt:  RYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

P29136 Metalloendoproteinase 14.7e-1056.6Show/hide
Query:  YDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
        +DLESVA+HEIGH LGLGH+    A+M+P++   +RK  L  DDI+GI  LYG
Subjt:  YDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

Q5XF51 Metalloendoproteinase 3-MMP1.2e-1334.19Show/hide
Query:  LTYGF-IHNYPPEHVGPVM-RAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF----------------------------------------
        LTY F   N   E V  V  RAF  WE  T  TF++  R  T+D          G G PF                                        
Subjt:  LTYGF-IHNYPPEHVGPVM-RAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF----------------------------------------

Query:  LRYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
           DLESVA+HEIGH LGLGH+ V+ ++M+PT+  G RK  L  DD+ G+  LYG
Subjt:  LRYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

Q8GWW6 Metalloendoproteinase 4-MMP6.5e-1259.62Show/hide
Query:  DLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
        DLESVA+HEIGH LGLGH+ V+DA M+PT+   S+K  L+ DD+ G+ +LYG
Subjt:  DLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

Q9ZUJ5 Metalloendoproteinase 5-MMP1.6e-1333.33Show/hide
Query:  LTYGFI--HNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF----------------------------------------
        LTY F   +N   E      RAF  W   T   F++S  +  AD +        G G PF                                        
Subjt:  LTYGFI--HNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF----------------------------------------

Query:  -LRYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
            DLESVA+HEIGH LGLGH+ V+DA+M+P ++ G RK  L  DDI GI  LYG
Subjt:  -LRYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

Arabidopsis top hitse value%identityAlignment
AT1G24140.1 Matrixin family protein8.4e-1534.19Show/hide
Query:  LTYGF-IHNYPPEHVGPVM-RAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF----------------------------------------
        LTY F   N   E V  V  RAF  WE  T  TF++  R  T+D          G G PF                                        
Subjt:  LTYGF-IHNYPPEHVGPVM-RAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF----------------------------------------

Query:  LRYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
           DLESVA+HEIGH LGLGH+ V+ ++M+PT+  G RK  L  DD+ G+  LYG
Subjt:  LRYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

AT1G59970.1 Matrixin family protein1.1e-1433.33Show/hide
Query:  LTYGFI--HNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF----------------------------------------
        LTY F   +N   E      RAF  W   T   F++S  +  AD +        G G PF                                        
Subjt:  LTYGFI--HNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF----------------------------------------

Query:  -LRYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
            DLESVA+HEIGH LGLGH+ V+DA+M+P ++ G RK  L  DDI GI  LYG
Subjt:  -LRYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

AT1G70170.1 matrix metalloproteinase1.9e-1433.77Show/hide
Query:  LTYGFIHNYP-PEHVGPVM-RAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF---------------------------------------L
        LTY F    P  E V  V  RAF  W   T   F+ S    T+D          G G PF                                        
Subjt:  LTYGFIHNYP-PEHVGPVM-RAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPF---------------------------------------L

Query:  RYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
          DLESVA+HEIGH LGLGH+ V++++M+PT+  G RK  L +DD+ GI  LYG
Subjt:  RYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

AT2G45040.1 Matrixin family protein4.6e-1359.62Show/hide
Query:  DLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
        DLESVA+HEIGH LGLGH+ V+DA M+PT+   S+K  L+ DD+ G+ +LYG
Subjt:  DLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG

AT4G16640.1 Matrixin family protein1.6e-1046.38Show/hide
Query:  ETW-----GRGVPFLRYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG
        ETW      +G   +  DLESVA HEIGH LGLGH+  + AVM+P++   ++K  L  DD+ G+  LYG
Subjt:  ETW-----GRGVPFLRYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDINGIHALYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCAGCTGACGTACGGATTTATCCACAATTACCCACCAGAGCACGTGGGTCCAGTTATGAGAGCCTTTGAGACATGGGAAGCCAACACCCATTTTACATTCTCCCA
GTCAGCCAGGGTCCAAACCGCTGACACACTGTTTAGCCTGGAGAAAGAGACGTGGGGAAGGGGTGTTCCTTTTTTACGGTATGACCTGGAGTCGGTGGCGTTGCATGAGA
TTGGGCATGCTCTTGGGCTTGGCCATACCCACGTTCAAGATGCCGTCATGTGGCCTACCATGAACTTTGGGTCCAGGAAGACTCGCTTGCATGATGATGATATTAATGGT
ATTCATGCTCTATATGGAAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCAGCTGACGTACGGATTTATCCACAATTACCCACCAGAGCACGTGGGTCCAGTTATGAGAGCCTTTGAGACATGGGAAGCCAACACCCATTTTACATTCTCCCA
GTCAGCCAGGGTCCAAACCGCTGACACACTGTTTAGCCTGGAGAAAGAGACGTGGGGAAGGGGTGTTCCTTTTTTACGGTATGACCTGGAGTCGGTGGCGTTGCATGAGA
TTGGGCATGCTCTTGGGCTTGGCCATACCCACGTTCAAGATGCCGTCATGTGGCCTACCATGAACTTTGGGTCCAGGAAGACTCGCTTGCATGATGATGATATTAATGGT
ATTCATGCTCTATATGGAAACTAA
Protein sequenceShow/hide protein sequence
MGQLTYGFIHNYPPEHVGPVMRAFETWEANTHFTFSQSARVQTADTLFSLEKETWGRGVPFLRYDLESVALHEIGHALGLGHTHVQDAVMWPTMNFGSRKTRLHDDDING
IHALYGN