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CmoCh15G003610 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G003610
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionIsocitrate dehydrogenase [NADP]
Genome locationCmo_Chr15:1690041..1690754
RNA-Seq ExpressionCmoCh15G003610
SyntenyCmoCh15G003610
Gene Ontology termsGO:0006099 - tricarboxylic acid cycle (biological process)
GO:0006102 - isocitrate metabolic process (biological process)
GO:0006739 - NADP metabolic process (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0004450 - isocitrate dehydrogenase (NADP+) activity (molecular function)
GO:0051287 - NAD binding (molecular function)
InterPro domainsIPR004790 - Isocitrate dehydrogenase NADP-dependent
IPR024084 - Isopropylmalate dehydrogenase-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602427.1 Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4795.1Show/hide
Query:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM
        MVFVPENGETPRELEVYDFKGPGI LTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEE  IW EH LIDDM
Subjt:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM

Query:  VA
        VA
Subjt:  VA

KAG7016201.1 Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]6.6e-5096.08Show/hide
Query:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM
        MVFVPEN ETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIW EHWLIDDM
Subjt:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM

Query:  VA
        ++
Subjt:  VA

XP_022963180.1 isocitrate dehydrogenase [NADP]-like [Cucurbita moschata]1.1e-4795.1Show/hide
Query:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM
        MVFVPENGETPRELEVYDFKGPGI LTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEE  IW EH LIDDM
Subjt:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM

Query:  VA
        VA
Subjt:  VA

XP_038890600.1 isocitrate dehydrogenase [NADP] isoform X2 [Benincasa hispida]1.8e-4793.14Show/hide
Query:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM
        MVF+PENGE PRELEVYDFKGPGI LTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQ+VYEEKWKQKFEEN IW EH LIDDM
Subjt:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM

Query:  VA
        VA
Subjt:  VA

XP_038890601.1 isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial isoform X3 [Benincasa hispida]1.8e-4793.14Show/hide
Query:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM
        MVF+PENGE PRELEVYDFKGPGI LTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQ+VYEEKWKQKFEEN IW EH LIDDM
Subjt:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM

Query:  VA
        VA
Subjt:  VA

TrEMBL top hitse value%identityAlignment
A0A0A0KP32 Isocitrate dehydrogenase [NADP]5.6e-4793.14Show/hide
Query:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM
        MVFVPENGETPRELEVYDFKG GI L MYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQ+VYEEKWKQKFEEN IW EH LIDDM
Subjt:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM

Query:  VA
        VA
Subjt:  VA

A0A1S3C8N1 Isocitrate dehydrogenase [NADP]4.3e-4793.14Show/hide
Query:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM
        MVFVPENGETPRELEVYDFKG GI LTMYNVD+SIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQ+VYEEKWKQKFEEN IW EH LIDDM
Subjt:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM

Query:  VA
        VA
Subjt:  VA

A0A5A7T3K6 Isocitrate dehydrogenase [NADP]4.3e-4793.14Show/hide
Query:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM
        MVFVPENGETPRELEVYDFKG GI LTMYNVD+SIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQ+VYEEKWKQKFEEN IW EH LIDDM
Subjt:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM

Query:  VA
        VA
Subjt:  VA

A0A6J1HH92 Isocitrate dehydrogenase [NADP]5.1e-4895.1Show/hide
Query:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM
        MVFVPENGETPRELEVYDFKGPGI LTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEE  IW EH LIDDM
Subjt:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM

Query:  VA
        VA
Subjt:  VA

A0A6J1JP31 Isocitrate dehydrogenase [NADP]2.1e-4692.16Show/hide
Query:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM
        MVFVPE+GETPRELEVYDFKGPGI L MYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQ+VYEEKWKQKFEE  IW EH LIDDM
Subjt:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM

Query:  VA
        VA
Subjt:  VA

SwissProt top hitse value%identityAlignment
P50217 Isocitrate dehydrogenase [NADP]1.9e-3669.9Show/hide
Query:  MVFVPENGETPRELEVYDFKGP-GIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDD
        +VFVPE  +   E EVY+F G  G+ L+MYN DES+++FAE+SM++AF+KKWPLYLSTKNTILKKYDGRFKDIFQEVYE  WK K+EE  IW EH LIDD
Subjt:  MVFVPENGETPRELEVYDFKGP-GIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDD

Query:  MVA
        MVA
Subjt:  MVA

P50218 Isocitrate dehydrogenase [NADP]2.1e-3567.96Show/hide
Query:  MVFVPENGETPRELEVYDFKGP-GIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDD
        +VFVPE  +   E EVY+F G  G+ L+MYN DES+++FAE+SM++A++KKWPLYLSTKNTILKKYDGRFKDIFQEVYE  WK K+EE  IW EH LIDD
Subjt:  MVFVPENGETPRELEVYDFKGP-GIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDD

Query:  MVA
        M A
Subjt:  MVA

Q06197 Isocitrate dehydrogenase [NADP]3.1e-3469.9Show/hide
Query:  MVFVPENGETPRELEVYDFKGP-GIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDD
        +VFVPE      E EV++F G  G+ L MYN DESI++FAE+SM+ A EKKWPLYLSTKNTILKKYDGRFKDIFQEVYE  WK KFE   IW EH LIDD
Subjt:  MVFVPENGETPRELEVYDFKGP-GIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDD

Query:  MVA
        MVA
Subjt:  MVA

Q40345 Isocitrate dehydrogenase [NADP], chloroplastic (Fragment)1.8e-3469.9Show/hide
Query:  MVFVPENGETPRELEVYDFKGP-GIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDD
        +VFVPE      +LEVY+F G  G+ L MYN DESI++FAE+SM++A EKKWPLYLSTKNTILKKYDGRFKDIFQEVYE  WK K+E   IW EH LIDD
Subjt:  MVFVPENGETPRELEVYDFKGP-GIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDD

Query:  MVA
        MVA
Subjt:  MVA

Q8LPJ5 Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial1.6e-4381.37Show/hide
Query:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM
        MVFVPE+G  P EL+VYDFKGPG+ L MYNVDESI+AFAESSM++A  KKWPLYLSTKNTILKKYDGRFKDIFQEVYE  WKQKFEE+ IW EH LIDDM
Subjt:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM

Query:  VA
        VA
Subjt:  VA

Arabidopsis top hitse value%identityAlignment
AT1G54340.1 isocitrate dehydrogenase1.4e-3466.67Show/hide
Query:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM
        +VF P       E EV++F G G+ L MYN DESI+AFAESSM  A++KKWPLYLSTKNTILK YDGRFKDIFQEVYE  W+ K+E   IW EH LIDDM
Subjt:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM

Query:  VA
        VA
Subjt:  VA

AT1G65930.1 cytosolic NADP+-dependent isocitrate dehydrogenase6.0e-3366.02Show/hide
Query:  MVFVPENGETPRELEVYDFKGP-GIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDD
        M F  ++G+T  E EV+ F G  G+ + MYN DESI+AFA++SM+ A+EKKWPLYLSTKNTILKKYDGRFKDIFQEVYE  WK K++   IW EH LIDD
Subjt:  MVFVPENGETPRELEVYDFKGP-GIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDD

Query:  MVA
        MVA
Subjt:  MVA

AT5G14590.1 Isocitrate/isopropylmalate dehydrogenase family protein1.2e-4481.37Show/hide
Query:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM
        MVFVPE+G  P EL+VYDFKGPG+ L MYNVDESI+AFAESSM++A  KKWPLYLSTKNTILKKYDGRFKDIFQEVYE  WKQKFEE+ IW EH LIDDM
Subjt:  MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDM

Query:  VA
        VA
Subjt:  VA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTTGTTCCAGAAAATGGGGAGACACCGAGAGAGCTCGAGGTTTATGACTTCAAAGGACCAGGCATTGGGCTTACGATGTATAATGTTGACGAGTCTATTCAAGC
ATTTGCAGAGTCCTCAATGTCACTGGCATTTGAGAAGAAGTGGCCCTTGTATCTGAGCACTAAGAATACAATTCTTAAGAAATATGATGGCAGGTTTAAAGATATATTTC
AAGAAGTGTACGAGGAAAAGTGGAAGCAGAAGTTTGAAGAAAATTTGATATGGTGCGAACATTGGCTTATTGATGACATGGTAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGTTTGTTCCAGAAAATGGGGAGACACCGAGAGAGCTCGAGGTTTATGACTTCAAAGGACCAGGCATTGGGCTTACGATGTATAATGTTGACGAGTCTATTCAAGC
ATTTGCAGAGTCCTCAATGTCACTGGCATTTGAGAAGAAGTGGCCCTTGTATCTGAGCACTAAGAATACAATTCTTAAGAAATATGATGGCAGGTTTAAAGATATATTTC
AAGAAGTGTACGAGGAAAAGTGGAAGCAGAAGTTTGAAGAAAATTTGATATGGTGCGAACATTGGCTTATTGATGACATGGTAGCTTAG
Protein sequenceShow/hide protein sequence
MVFVPENGETPRELEVYDFKGPGIGLTMYNVDESIQAFAESSMSLAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKQKFEENLIWCEHWLIDDMVA