; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh15G003770 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G003770
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptiontRNA pseudouridine synthase B
Genome locationCmo_Chr15:1746350..1749429
RNA-Seq ExpressionCmoCh15G003770
SyntenyCmoCh15G003770
Gene Ontology termsGO:0006400 - tRNA modification (biological process)
GO:1990481 - mRNA pseudouridine synthesis (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0106029 - tRNA pseudouridine synthase activity (molecular function)
InterPro domainsIPR002501 - Pseudouridine synthase II, N-terminal
IPR014780 - tRNA pseudouridine synthase II, TruB
IPR020103 - Pseudouridine synthase, catalytic domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037597.1 TruB_N domain-containing protein [Cucumis melo var. makuwa]7.1e-5881.76Show/hide
Query:  LVVEFLGEVLAVSQVNKKFQLGSVPNEYIF---VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDI
        LV  + G +   S V   F+LG   + +     VIQREPWEHIKDDDIKKA ASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISI+KFDI
Subjt:  LVVEFLGEVLAVSQVNKKFQLGSVPNEYIF---VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDI

Query:  ERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIG
        ERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIG
Subjt:  ERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIG

KAG6578676.1 hypothetical protein SDJN03_23124, partial [Cucurbita argyrosperma subsp. sororia]8.4e-5997.46Show/hide
Query:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL
        VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL
Subjt:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL

Query:  GSCAHLTALRRDSIGSLI
        GSCAHLTALRRDSIG  +
Subjt:  GSCAHLTALRRDSIGSLI

XP_022938741.1 uncharacterized protein LOC111444875 [Cucurbita moschata]8.4e-5997.46Show/hide
Query:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL
        VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL
Subjt:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL

Query:  GSCAHLTALRRDSIGSLI
        GSCAHLTALRRDSIG  +
Subjt:  GSCAHLTALRRDSIGSLI

XP_022993331.1 uncharacterized protein LOC111489372 [Cucurbita maxima]7.1e-5895.76Show/hide
Query:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL
        VIQREPWEHIKDDDIKKA ASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGK L
Subjt:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL

Query:  GSCAHLTALRRDSIGSLI
        GSCAHLTALRRDSIG  +
Subjt:  GSCAHLTALRRDSIGSLI

XP_023550635.1 uncharacterized protein LOC111808717 [Cucurbita pepo subsp. pepo]8.4e-5997.46Show/hide
Query:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL
        VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL
Subjt:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL

Query:  GSCAHLTALRRDSIGSLI
        GSCAHLTALRRDSIG  +
Subjt:  GSCAHLTALRRDSIGSLI

TrEMBL top hitse value%identityAlignment
A0A1S3C8B0 uncharacterized protein LOC1034981183.5e-5881.76Show/hide
Query:  LVVEFLGEVLAVSQVNKKFQLGSVPNEYIF---VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDI
        LV  + G +   S V   F+LG   + +     VIQREPWEHIKDDDIKKA ASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISI+KFDI
Subjt:  LVVEFLGEVLAVSQVNKKFQLGSVPNEYIF---VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDI

Query:  ERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIG
        ERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIG
Subjt:  ERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIG

A0A5A7T7S0 TruB_N domain-containing protein3.5e-5881.76Show/hide
Query:  LVVEFLGEVLAVSQVNKKFQLGSVPNEYIF---VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDI
        LV  + G +   S V   F+LG   + +     VIQREPWEHIKDDDIKKA ASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISI+KFDI
Subjt:  LVVEFLGEVLAVSQVNKKFQLGSVPNEYIF---VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDI

Query:  ERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIG
        ERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIG
Subjt:  ERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIG

A0A6J1BZC1 uncharacterized protein LOC1110066172.2e-5778.81Show/hide
Query:  LVVEFLGEVLAVSQVNKKFQLGSVPNEYIF---VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDI
        LV  + G + + S V   F+LG   + +     VIQREPWEHIKDDDI+KA ASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISI+KFDI
Subjt:  LVVEFLGEVLAVSQVNKKFQLGSVPNEYIF---VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDI

Query:  ERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGSLI
        ERSLDDRQNLIFRVTCSKGTYIRSLCADLGK LGSCAHLTALRRDSIG  +
Subjt:  ERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGSLI

A0A6J1FDZ7 uncharacterized protein LOC1114448754.1e-5997.46Show/hide
Query:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL
        VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL
Subjt:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL

Query:  GSCAHLTALRRDSIGSLI
        GSCAHLTALRRDSIG  +
Subjt:  GSCAHLTALRRDSIGSLI

A0A6J1JSH8 uncharacterized protein LOC1114893723.5e-5895.76Show/hide
Query:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL
        VIQREPWEHIKDDDIKKA ASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGK L
Subjt:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL

Query:  GSCAHLTALRRDSIGSLI
        GSCAHLTALRRDSIG  +
Subjt:  GSCAHLTALRRDSIGSLI

SwissProt top hitse value%identityAlignment
Q0SSD7 tRNA pseudouridine synthase B5.5e-2140Show/hide
Query:  VVEFLGEVLAVSQVNKKFQLGSVPNEYIF---VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIE
        +++++ E   V +VN K  LG V + Y     V++ E   HI  D+I   + SF G I QVPPM+SA+K  G ++YE AR+G  +    R+I+IY  +  
Subjt:  VVEFLGEVLAVSQVNKKFQLGSVPNEYIF---VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIE

Query:  RSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGSLI
          ++   N+   V CSKGTYIRSLC D+G+ L   A +TAL R   G  I
Subjt:  RSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGSLI

Q5LZV2 tRNA pseudouridine synthase B4.2e-2143.09Show/hide
Query:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQN----LIFRVTCSKGTYIRSLCADL
        V+Q  P   +    + +A+ASF GEI Q+PPM+SA+K+ G+K+YE AR GE +E   R++ I +F +  S  + +N      FRV CSKGTY+R+L  DL
Subjt:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQN----LIFRVTCSKGTYIRSLCADL

Query:  GKALGSCAHLTALRRDSIGSLII
        G  LG  +H++ALRR +   L +
Subjt:  GKALGSCAHLTALRRDSIGSLII

Q5M4G2 tRNA pseudouridine synthase B4.2e-2143.09Show/hide
Query:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQN----LIFRVTCSKGTYIRSLCADL
        V+Q  P   +    + +A+ASF GEI Q+PPM+SA+K+ G+K+YE AR GE +E   R++ I +F +  S  + +N      FRV CSKGTY+R+L  DL
Subjt:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQN----LIFRVTCSKGTYIRSLCADL

Query:  GKALGSCAHLTALRRDSIGSLII
        G  LG  +H++ALRR +   L +
Subjt:  GKALGSCAHLTALRRDSIGSLII

Q5NZR9 tRNA pseudouridine synthase B8.6e-2242.55Show/hide
Query:  HIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTA
        H+ DD I++A+A+  GEI QVPPM+SA+K  G+ +YE AR G  +E + R ++I+  ++     D  +L  RV CSKGTY+R+L  DLG+ LG   HLT 
Subjt:  HIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTA

Query:  LRRDSIGSLIIRVHIKHHPF-TDISMTLLIKERRPRDERKG
        LRR  IG           PF  D ++TL   E  P + R G
Subjt:  LRRDSIGSLIIRVHIKHHPF-TDISMTLLIKERRPRDERKG

Q9RB36 tRNA pseudouridine synthase B9.1e-2446.67Show/hide
Query:  FQLGSVPNEYIF---VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSK
        F +G+    Y     + Q  P EHI +  I + V  F GEI Q PP+FSAIK  G ++YE AR GESIE+  R+ +I++F+I R       + FRV CSK
Subjt:  FQLGSVPNEYIF---VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSK

Query:  GTYIRSLCADLGKALGSCAHLTALRRDSIGSLIIR
        GTYIRSL  D GKA+ S +HLT LRR  IG   ++
Subjt:  GTYIRSLCADLGKALGSCAHLTALRRDSIGSLIIR

Arabidopsis top hitse value%identityAlignment
AT3G57150.1 homologue of NAP572.7e-0732.04Show/hide
Query:  IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSI
        + +A+ S  G ++Q PP+ SA+K                    R  +IY+  +     DR  ++F V+C  GTYIR++C  LG  LG   H+  LRR   
Subjt:  IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSI

Query:  GSL
        G L
Subjt:  GSL

AT5G14460.1 Pseudouridine synthase family protein3.8e-5791.3Show/hide
Query:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL
        VIQRE WEHIKDDDIKKA+ SF GEIWQVPPMFSAIKVGGEKMYEKARRGE++ELSPRRISI++FDIERSLDDRQNLIFRV CSKGTYIRSLCADL KAL
Subjt:  VIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKAL

Query:  GSCAHLTALRRDSIG
        GSCAHLTALRRDSIG
Subjt:  GSCAHLTALRRDSIG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCTATGTTCTATACCTGCTGTGTTCTTTGGGAAATGTATTGGATCTGTCAGAGGAATCTTTATTGTTCAAGTCTTAAGGAAGAAGATCTATGATTCTATA
TTAACTCATCAAACATTTGCCTCTGGCAACATAATGTTCTTCAACATTCTATTAGTTGTTGAGTTCTTAGGTGAGGTTTTGGCTGTCTCACAGGTCAATAAAAAA
TTTCAATTGGGTTCAGTTCCTAATGAGTATATATTTGTAATTCAGCGAGAGCCTTGGGAGCACATCAAAGATGATGACATCAAAAAAGCTGTTGCCTCTTTTTGT
GGGGAAATTTGGCAAGTTCCTCCCATGTTTTCTGCCATTAAAGTCGGAGGTGAGAAGATGTATGAGAAAGCAAGAAGAGGAGAAAGTATTGAGCTTTCCCCTAGG
CGGATATCAATTTACAAATTTGATATTGAACGTAGTTTAGATGACAGGCAAAATTTGATATTTCGAGTAACATGCTCTAAAGGAACATACATTCGGTCACTTTGT
GCGGATCTTGGGAAGGCTCTTGGCAGTTGTGCCCATCTGACTGCTCTTCGAAGGGATTCAATAGGATCTCTCATCATCAGGGTCCATATTAAGCACCACCCCTTC
ACAGACATTTCTATGACTCTTCTGATTAAAGAAAGACGACCCCGAGATGAAAGGAAAGGAGATAAGTGGTGGGGTTTGGAATTCATCAGCTGCTTACCCCTTCCC
ATGGTGGCCTCCCATTTTCGGCTTTTCCCTGTTGGAAGAATATATCGTGAGAAGAAAATCTTTGTTATGAAATGGTTAGAGGCAGTATCCAAAGTGTCGGATTAC
CTGGTTCCCAAGAGAAGGAACGCTTTGGTGCACAATCCACTGAGCGTCTACAACCCCTATTTTCTCATGAGCTGGCTGTGCTTTAAAACACGAAGAGTGATGAAT
CCAGGGGAAAAAATAACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATCTATGTTCTATACCTGCTGTGTTCTTTGGGAAATGTATTGGATCTGTCAGAGGAATCTTTATTGTTCAAGTCTTAAGGAAGAAGATCTATGATTCTATA
TTAACTCATCAAACATTTGCCTCTGGCAACATAATGTTCTTCAACATTCTATTAGTTGTTGAGTTCTTAGGTGAGGTTTTGGCTGTCTCACAGGTCAATAAAAAA
TTTCAATTGGGTTCAGTTCCTAATGAGTATATATTTGTAATTCAGCGAGAGCCTTGGGAGCACATCAAAGATGATGACATCAAAAAAGCTGTTGCCTCTTTTTGT
GGGGAAATTTGGCAAGTTCCTCCCATGTTTTCTGCCATTAAAGTCGGAGGTGAGAAGATGTATGAGAAAGCAAGAAGAGGAGAAAGTATTGAGCTTTCCCCTAGG
CGGATATCAATTTACAAATTTGATATTGAACGTAGTTTAGATGACAGGCAAAATTTGATATTTCGAGTAACATGCTCTAAAGGAACATACATTCGGTCACTTTGT
GCGGATCTTGGGAAGGCTCTTGGCAGTTGTGCCCATCTGACTGCTCTTCGAAGGGATTCAATAGGATCTCTCATCATCAGGGTCCATATTAAGCACCACCCCTTC
ACAGACATTTCTATGACTCTTCTGATTAAAGAAAGACGACCCCGAGATGAAAGGAAAGGAGATAAGTGGTGGGGTTTGGAATTCATCAGCTGCTTACCCCTTCCC
ATGGTGGCCTCCCATTTTCGGCTTTTCCCTGTTGGAAGAATATATCGTGAGAAGAAAATCTTTGTTATGAAATGGTTAGAGGCAGTATCCAAAGTGTCGGATTAC
CTGGTTCCCAAGAGAAGGAACGCTTTGGTGCACAATCCACTGAGCGTCTACAACCCCTATTTTCTCATGAGCTGGCTGTGCTTTAAAACACGAAGAGTGATGAAT
CCAGGGGAAAAAATAACGTGA
Protein sequenceShow/hide protein sequence
MHLCSIPAVFFGKCIGSVRGIFIVQVLRKKIYDSILTHQTFASGNIMFFNILLVVEFLGEVLAVSQVNKKFQLGSVPNEYIFVIQREPWEHIKDDDIKKAVASFC
GEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGSLIIRVHIKHHPF
TDISMTLLIKERRPRDERKGDKWWGLEFISCLPLPMVASHFRLFPVGRIYREKKIFVMKWLEAVSKVSDYLVPKRRNALVHNPLSVYNPYFLMSWLCFKTRRVMN
PGEKIT