; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh15G004580 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G004580
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationCmo_Chr15:2086325..2088762
RNA-Seq ExpressionCmoCh15G004580
SyntenyCmoCh15G004580
Gene Ontology termsGO:0009416 - response to light stimulus (biological process)
GO:0009768 - photosynthesis, light harvesting in photosystem I (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista
IPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143800.1 chlorophyll a-b binding protein 6A, chloroplastic [Cucumis sativus]1.5e-13597.15Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
        MASNTLMSCGIATTAFPSVLSSSKSKFA GVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAV
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV

Query:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
        PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KLKEYKVKEIKNGRLA
Subjt:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA

Query:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
        LLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDIIIPR+ISP
Subjt:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP

XP_008453995.1 PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Cucumis melo]2.5e-13596.75Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
        MASNTLMSCGIATTAFPSVLSSSKSKFA  VPISGVAVNASSRFSMS+EWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV

Query:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
        PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KLKEYKVKEIKNGRLA
Subjt:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA

Query:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
        LLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDIIIPR+ISP
Subjt:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP

XP_022939932.1 chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita moschata]1.3e-139100Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
        MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV

Query:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
        PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
Subjt:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA

Query:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
        LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
Subjt:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP

XP_023549541.1 chlorophyll a-b binding protein 6A, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo]8.2e-139100Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
        MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV

Query:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
        PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
Subjt:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA

Query:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSIS
        LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSIS
Subjt:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSIS

XP_038891246.1 chlorophyll a-b binding protein 6A, chloroplastic [Benincasa hispida]1.5e-13596.75Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
        MASNTLMSCGIATTAFPSVLSSSKSKFA  VPISGVAVNASSRFSMSAEWMPGQPRPPYLDGS+PGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV

Query:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
        PGILVPEALGLGNWVKAQEWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KLKEYKVKEIKNGRLA
Subjt:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA

Query:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
        LLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
Subjt:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP

TrEMBL top hitse value%identityAlignment
A0A0A0KNM4 Chlorophyll a-b binding protein, chloroplastic7.0e-13697.15Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
        MASNTLMSCGIATTAFPSVLSSSKSKFA GVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAV
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV

Query:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
        PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KLKEYKVKEIKNGRLA
Subjt:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA

Query:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
        LLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDIIIPR+ISP
Subjt:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP

A0A1S3BYE0 Chlorophyll a-b binding protein, chloroplastic1.2e-13596.75Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
        MASNTLMSCGIATTAFPSVLSSSKSKFA  VPISGVAVNASSRFSMS+EWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV

Query:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
        PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KLKEYKVKEIKNGRLA
Subjt:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA

Query:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
        LLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDIIIPR+ISP
Subjt:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP

A0A5A7TXV7 Chlorophyll a-b binding protein, chloroplastic1.2e-13596.75Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
        MASNTLMSCGIATTAFPSVLSSSKSKFA  VPISGVAVNASSRFSMS+EWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV

Query:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
        PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KLKEYKVKEIKNGRLA
Subjt:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA

Query:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
        LLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDIIIPR+ISP
Subjt:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP

A0A6J1FI72 Chlorophyll a-b binding protein, chloroplastic6.1e-140100Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
        MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV

Query:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
        PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
Subjt:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA

Query:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
        LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
Subjt:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP

A0A6J1JZ33 Chlorophyll a-b binding protein, chloroplastic6.1e-140100Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
        MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV

Query:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
        PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
Subjt:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA

Query:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
        LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
Subjt:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP

SwissProt top hitse value%identityAlignment
P12360 Chlorophyll a-b binding protein 6A, chloroplastic4.4e-11984.15Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV
        MASNTLMSCGI     PS LSS+KSKFA  +P+   A N  SRFSMSA+WMPGQPRP YLDGSAPGDFGFD L LGEVP NLER+KESELIHCRWAMLAV
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV

Query:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA
        PGI+VPEALGLGNWVKAQEWAA+PGGQATYLGQPVPWGTLPTIL IEFLAIAFVEHQRSMEKD+EKKKYPGGAFDPLGYSKDP K +E KVKEIKNGRLA
Subjt:  PGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLA

Query:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP
        LLA VG CVQQ+AY GTGPLENLATHLADPWHNNIGD+IIP+ I P
Subjt:  LLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP

Q01667 Chlorophyll a-b binding protein 6, chloroplastic5.0e-11583.88Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKF-ATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLA
        MASN+LMSCGIA   +PS+LSSSKSKF + GVP+         R  M+A WMPG+PRP YLDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLA
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKF-ATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLA

Query:  VPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRL
        VPGILVPEALG GNWVKAQEWAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KL+E KVKEIKNGRL
Subjt:  VPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRL

Query:  ALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIP
        ALLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDI+IP
Subjt:  ALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIP

Q07473 Chlorophyll a-b binding protein CP29.1, chloroplastic5.5e-3740.52Show/hide
Query:  WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPE-------------------------------------------NLERFKESELIHCRWAMLAVPGILVP
        W PG   P +LDGS  GD+GFDP  LG+  E                                            ++RF+E ELIH RWAMLA  G L  
Subjt:  WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPE-------------------------------------------NLERFKESELIHCRWAMLAVPGILVP

Query:  EALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGA-FDPLGYSKDPVKLKEYKVKEIKNGRLALLAFV
        E L    W  A +   V G  ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D+EK+ YPGG  FDPLG + DP K  + ++ EIK+ RLA++AF+
Subjt:  EALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGA-FDPLGYSKDPVKLKEYKVKEIKNGRLALLAFV

Query:  GICVQQTAYPGTGPLENLATHLADPWHNNIGD
        G  VQ  A  G GPL N ATHL+DP H  I D
Subjt:  GICVQQTAYPGTGPLENLATHLADPWHNNIGD

Q9SDM1 Chlorophyll a-b binding protein 1B-21, chloroplastic6.8e-10474.07Show/hide
Query:  ASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVP
        +S+ L SC  +    PS+L+ S     +G+P    A   S R +MSAEW PGQPRP +LDGS+PGDFGFDPL L  VPEN ERFKESE+ HCRWAML VP
Subjt:  ASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVP

Query:  GILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLAL
        G+LVPEALGLGNWVKAQEWAA+P GQATYLG PVPWG LPTIL IEFLAIAF E QR+MEKD EKKKYPGGAFDPLG+SKDP K +E K+KEIKNGRLA+
Subjt:  GILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLAL

Query:  LAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSI
        LAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDI+IPR+I
Subjt:  LAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIPRSI

Q9XF88 Chlorophyll a-b binding protein CP29.2, chloroplastic2.5e-3737.23Show/hide
Query:  SNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVN---ASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPE-------------------
        S    +  I  T   S +SS+ S+F           +   A +  S    W PG   P YLDGS  GD+GFDP  LG+  E                   
Subjt:  SNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVN---ASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPE-------------------

Query:  ------------------------NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEH
                                 L+RF+E ELIH RWAMLA  G +  E L    W  A +   V G  ++YLGQP+P+ ++ T++ IE L I ++E 
Subjt:  ------------------------NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEH

Query:  QRSMEKDTEKKKYPGGA-FDPLGYSKDPVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGD
        QR+ E D+EK+ YPGG  FDPLG + DPVK  + ++ EIK+ RLA++ F+G  VQ  A  G GPL N ATHL+DP H  I D
Subjt:  QRSMEKDTEKKKYPGGA-FDPLGYSKDPVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGD

Arabidopsis top hitse value%identityAlignment
AT3G08940.2 light harvesting complex photosystem II1.8e-3837.23Show/hide
Query:  SNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVN---ASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPE-------------------
        S    +  I  T   S +SS+ S+F           +   A +  S    W PG   P YLDGS  GD+GFDP  LG+  E                   
Subjt:  SNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVN---ASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPE-------------------

Query:  ------------------------NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEH
                                 L+RF+E ELIH RWAMLA  G +  E L    W  A +   V G  ++YLGQP+P+ ++ T++ IE L I ++E 
Subjt:  ------------------------NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEH

Query:  QRSMEKDTEKKKYPGGA-FDPLGYSKDPVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGD
        QR+ E D+EK+ YPGG  FDPLG + DPVK  + ++ EIK+ RLA++ F+G  VQ  A  G GPL N ATHL+DP H  I D
Subjt:  QRSMEKDTEKKKYPGGA-FDPLGYSKDPVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGD

AT3G54890.1 photosystem I light harvesting complex gene 13.6e-11683.88Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKF-ATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLA
        MASN+LMSCGIA   +PS+LSSSKSKF + GVP+         R  M+A WMPG+PRP YLDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLA
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKF-ATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLA

Query:  VPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRL
        VPGILVPEALG GNWVKAQEWAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KL+E KVKEIKNGRL
Subjt:  VPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRL

Query:  ALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIP
        ALLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDI+IP
Subjt:  ALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIP

AT3G54890.2 photosystem I light harvesting complex gene 11.4e-9171.07Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKF-ATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLA
        MASN+LMSCGIA   +PS+LSSSKSKF + GVP+         R  M+A WMPG+PRP YLDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLA
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKF-ATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLA

Query:  VPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRL
        VPGILVPEALG GNWVKAQEWAA+PGGQATYLG PVPWGTLPTIL IEFLAIAF                                  E KVKEIKNGRL
Subjt:  VPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRL

Query:  ALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIP
        ALLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDI+IP
Subjt:  ALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDIIIP

AT3G54890.3 photosystem I light harvesting complex gene 11.0e-6278.81Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKF-ATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLA
        MASN+LMSCGIA   +PS+LSSSKSKF + GVP+         R  M+A WMPG+PRP YLDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLA
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKF-ATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLA

Query:  VPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLA
        VPGILVPEALG GNWVKAQEWAA+PGGQATYLG PVPWGTLPTIL IEFLA
Subjt:  VPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLA

AT3G54890.4 photosystem I light harvesting complex gene 12.9e-8981.41Show/hide
Query:  MASNTLMSCGIATTAFPSVLSSSKSKF-ATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLA
        MASN+LMSCGIA   +PS+LSSSKSKF + GVP+         R  M+A WMPG+PRP YLDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLA
Subjt:  MASNTLMSCGIATTAFPSVLSSSKSKF-ATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLA

Query:  VPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGR
        VPGILVPEALG GNWVKAQEWAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSKDP KL+E KVKEIKNG+
Subjt:  VPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCAACACCTTGATGAGCTGCGGCATCGCCACCACCGCTTTCCCTTCAGTTCTTTCCTCCTCTAAGTCTAAATTCGCCACCGGTGTCCCGATTTCTGGCGTCGC
CGTCAATGCGTCATCCCGGTTTTCCATGTCCGCCGAGTGGATGCCCGGCCAGCCTCGCCCCCCGTACCTTGACGGCTCAGCCCCCGGTGATTTTGGCTTCGATCCTCTTC
GTCTGGGAGAAGTGCCAGAGAACCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCTGAGGCTTTGGGG
TTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCAGTTCCTGGAGGCCAAGCTACCTACTTGGGGCAGCCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGA
GTTCCTTGCCATTGCCTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACACCGAGAAGAAGAAGTACCCTGGAGGCGCTTTCGACCCATTGGGCTACTCAAAAGACCCTG
TAAAGCTGAAGGAATACAAAGTCAAAGAGATCAAAAACGGTCGGTTGGCGCTGTTAGCTTTCGTCGGAATCTGTGTGCAACAAACGGCATACCCAGGAACAGGGCCATTG
GAGAACTTGGCTACTCACTTGGCTGACCCATGGCACAACAACATTGGCGACATTATCATCCCCAGATCAATTTCGCCTTGA
mRNA sequenceShow/hide mRNA sequence
CCAGCTGGATATTCCACGTCAGCAAATAAAATGGATTGACAAATTCCAGCTGGCTCAATGAGATCACAAAACCAACCCACTCTTAGCCAATGAACACCGAGCTTTAGATT
CCCCAATCTTCTCTACTGCCTGTGCTTTTAGTCCCCTTCTCCCCCTTCTTCTTCCGCCATTCCACTCTCGTCGTCTTTGCCCGTGTTCTTCAATGGCTTCCAACACCTTG
ATGAGCTGCGGCATCGCCACCACCGCTTTCCCTTCAGTTCTTTCCTCCTCTAAGTCTAAATTCGCCACCGGTGTCCCGATTTCTGGCGTCGCCGTCAATGCGTCATCCCG
GTTTTCCATGTCCGCCGAGTGGATGCCCGGCCAGCCTCGCCCCCCGTACCTTGACGGCTCAGCCCCCGGTGATTTTGGCTTCGATCCTCTTCGTCTGGGAGAAGTGCCAG
AGAACCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCTGAGGCTTTGGGGTTGGGCAACTGGGTGAAA
GCTCAGGAATGGGCAGCAGTTCCTGGAGGCCAAGCTACCTACTTGGGGCAGCCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTT
TGTAGAGCACCAGCGCAGCATGGAGAAAGACACCGAGAAGAAGAAGTACCCTGGAGGCGCTTTCGACCCATTGGGCTACTCAAAAGACCCTGTAAAGCTGAAGGAATACA
AAGTCAAAGAGATCAAAAACGGTCGGTTGGCGCTGTTAGCTTTCGTCGGAATCTGTGTGCAACAAACGGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCTACTCAC
TTGGCTGACCCATGGCACAACAACATTGGCGACATTATCATCCCCAGATCAATTTCGCCTTGAATTTTGCACTGAATCATACTAATTGTAATTAAATTCCGCCTACTGAA
TCTGAACTCGAGGGCTTCTTCTCTCTGAATGTGTTCCTTAACTTGATATTGACCTTCAAGCCTGTAAGTCACTGGTGGTCTTGGCCCAATCTGATTACCCAAAGTCAGAT
CAAAAGATCCCATTCAATCCATTGGGCCAAAGGCCCATAAACGGACAAGAAGCCCATACAAATGAGCCCATTGGACCATGAAAATGTGAATAATAGGCCCATATTAAGTG
ACCCCACATAAAG
Protein sequenceShow/hide protein sequence
MASNTLMSCGIATTAFPSVLSSSKSKFATGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALG
LGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPL
ENLATHLADPWHNNIGDIIIPRSISP