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CmoCh15G006170 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G006170
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionextensin-like
Genome locationCmo_Chr15:2996677..2996997
RNA-Seq ExpressionCmoCh15G006170
SyntenyCmoCh15G006170
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058957.1 hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa]2.1e-0649.07Show/hide
Query:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKF--KTSPPHRMPPWQRKFT
        MG   L+S YLFSLLIA   L+LP+KL A  +H S  TN + Y  PP PLP         PPP +C Q APPP   +N+ K     SPP  M  W R+FT
Subjt:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKF--KTSPPHRMPPWQRKFT

Query:  HTSPPPPF
          SPPPPF
Subjt:  HTSPPPPF

TYK29731.1 hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa]5.5e-0743.97Show/hide
Query:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPL-------------------PPFPSKKLP--YPPPSVCT---QLAPPPPPP
        MG +IL+S YLF LL A  SL+LPSKL A  +HPS  T   +Y+PPP PL                   PP P+KK     PPPS      +  PPPPP 
Subjt:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPL-------------------PPFPSKKLP--YPPPSVCT---QLAPPPPPP

Query:  KNRHKFKTS--------PPHRMPP---WQRKFTHTSPPPPF
        K R  FK+         PP R PP   W RKF   SPPPPF
Subjt:  KNRHKFKTS--------PPHRMPP---WQRKFTHTSPPPPF

XP_022939147.1 extensin-like [Cucurbita moschata]1.2e-49100Show/hide
Query:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPPWQRKFTHT
        MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPPWQRKFTHT
Subjt:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPPWQRKFTHT

Query:  SPPPPF
        SPPPPF
Subjt:  SPPPPF

XP_022993352.1 extensin-like [Cucurbita maxima]3.1e-4291.51Show/hide
Query:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPPWQRKFTHT
        MGSLIL+SFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPH+YQPP    PPFPS+KLPYPPPSVCTQLA  PPPPKNRHKFKTSPPHRMPPWQRKFTHT
Subjt:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPPWQRKFTHT

Query:  SPPPPF
        SPPPPF
Subjt:  SPPPPF

XP_023551507.1 extensin-3-like [Cucurbita pepo subsp. pepo]3.1e-4293.4Show/hide
Query:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPPWQRKFTHT
        MGSLIL SFYLFSLLIALLSLDLPSKLAA SLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLA PPPPPKNRHKFK SPPH M PWQRKFTH 
Subjt:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPPWQRKFTHT

Query:  SPPPPF
        SPPPPF
Subjt:  SPPPPF

TrEMBL top hitse value%identityAlignment
A0A0A0KI69 Uncharacterized protein7.0e-0849.09Show/hide
Query:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPP----WQRK
        MG   L+S YLFSLLIA   L+LPSKL A  +H S  TN ++Y PPP PL          PPP +C Q A  PPP K ++K K  P    PP    W R+
Subjt:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPP----WQRK

Query:  FTHTSPPPPF
        FT  SPPPPF
Subjt:  FTHTSPPPPF

A0A5A7UW72 Uncharacterized protein1.0e-0649.07Show/hide
Query:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKF--KTSPPHRMPPWQRKFT
        MG   L+S YLFSLLIA   L+LP+KL A  +H S  TN + Y  PP PLP         PPP +C Q APPP   +N+ K     SPP  M  W R+FT
Subjt:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKF--KTSPPHRMPPWQRKFT

Query:  HTSPPPPF
          SPPPPF
Subjt:  HTSPPPPF

A0A5D3E2A1 Uncharacterized protein2.7e-0743.97Show/hide
Query:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPL-------------------PPFPSKKLP--YPPPSVCT---QLAPPPPPP
        MG +IL+S YLF LL A  SL+LPSKL A  +HPS  T   +Y+PPP PL                   PP P+KK     PPPS      +  PPPPP 
Subjt:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPL-------------------PPFPSKKLP--YPPPSVCT---QLAPPPPPP

Query:  KNRHKFKTS--------PPHRMPP---WQRKFTHTSPPPPF
        K R  FK+         PP R PP   W RKF   SPPPPF
Subjt:  KNRHKFKTS--------PPHRMPP---WQRKFTHTSPPPPF

A0A6J1FFZ9 extensin-like5.7e-50100Show/hide
Query:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPPWQRKFTHT
        MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPPWQRKFTHT
Subjt:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPPWQRKFTHT

Query:  SPPPPF
        SPPPPF
Subjt:  SPPPPF

A0A6J1JSJ5 extensin-like1.5e-4291.51Show/hide
Query:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPPWQRKFTHT
        MGSLIL+SFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPH+YQPP    PPFPS+KLPYPPPSVCTQLA  PPPPKNRHKFKTSPPHRMPPWQRKFTHT
Subjt:  MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPPWQRKFTHT

Query:  SPPPPF
        SPPPPF
Subjt:  SPPPPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTCTCTAATATTGTCCTCCTTCTATCTCTTCTCCCTTCTCATTGCATTACTCTCTTTAGATCTCCCCTCAAAATTGGCTGCACGTTCCCTTCACCCATCTCCATG
CACCAATCCTCATCAATACCAGCCTCCGCCACCGCCTCTGCCGCCGTTTCCGTCTAAAAAACTCCCATATCCTCCTCCTTCAGTCTGCACCCAGCTCGCACCACCACCAC
CACCACCCAAGAACAGGCACAAATTCAAGACTTCGCCGCCGCATCGTATGCCGCCATGGCAAAGAAAGTTCACCCATACGTCACCTCCACCTCCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTCTCTAATATTGTCCTCCTTCTATCTCTTCTCCCTTCTCATTGCATTACTCTCTTTAGATCTCCCCTCAAAATTGGCTGCACGTTCCCTTCACCCATCTCCATG
CACCAATCCTCATCAATACCAGCCTCCGCCACCGCCTCTGCCGCCGTTTCCGTCTAAAAAACTCCCATATCCTCCTCCTTCAGTCTGCACCCAGCTCGCACCACCACCAC
CACCACCCAAGAACAGGCACAAATTCAAGACTTCGCCGCCGCATCGTATGCCGCCATGGCAAAGAAAGTTCACCCATACGTCACCTCCACCTCCTTTCTAA
Protein sequenceShow/hide protein sequence
MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPPWQRKFTHTSPPPPF