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CmoCh15G007190 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G007190
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionbiotin--protein ligase 2-like
Genome locationCmo_Chr15:3493018..3498252
RNA-Seq ExpressionCmoCh15G007190
SyntenyCmoCh15G007190
Gene Ontology termsGO:0016874 - ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7016515.1 Biotin--protein ligase 2, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-3246.64Show/hide
Query:  LKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTF-----------AISCNSNF-DLPLGTVCVADVQFKGRG----------------
        L RNDTLKLPD TEIS+FLHSERDEFLEE GFRIDSYLNALSTNTF            ISCNSNF D+PLGTVCVADVQFKGRG                
Subjt:  LKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTF-----------AISCNSNF-DLPLGTVCVADVQFKGRG----------------

Query:  ----------------------FRALEELYYQTWLH-RYDLVTSVYVVGKELLYRKR----------KMIKKWKMLSL-------------FSLFELYNC
                                A+++L  + + +   DL+ +  +    L+   R           +     +L++              SLFELYNC
Subjt:  ----------------------FRALEELYYQTWLH-RYDLVTSVYVVGKELLYRKR----------KMIKKWKMLSL-------------FSLFELYNC

Query:  ELSEKETEGQKILVARRHVRPRN
        ELSEKETEGQKILVARRHVRPRN
Subjt:  ELSEKETEGQKILVARRHVRPRN

XP_008447540.1 PREDICTED: biotin--protein ligase 2-like isoform X5 [Cucumis melo]2.5e-2866.36Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC
        MD SPTC+L LSGKTAA+NET KLLKRNDTLKLPD TEISV LHSE+D+ LEE GFRID YLNALST+TF               +  ++  +LPLG VC
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC

Query:  VADVQFKGRG
        VADVQFKGRG
Subjt:  VADVQFKGRG

XP_016900372.1 PREDICTED: biotin--protein ligase 2-like isoform X1 [Cucumis melo]2.5e-2866.36Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC
        MD SPTC+L LSGKTAA+NET KLLKRNDTLKLPD TEISV LHSE+D+ LEE GFRID YLNALST+TF               +  ++  +LPLG VC
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC

Query:  VADVQFKGRG
        VADVQFKGRG
Subjt:  VADVQFKGRG

XP_016900374.1 PREDICTED: biotin--protein ligase 2-like isoform X6 [Cucumis melo]2.5e-2866.36Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC
        MD SPTC+L LSGKTAA+NET KLLKRNDTLKLPD TEISV LHSE+D+ LEE GFRID YLNALST+TF               +  ++  +LPLG VC
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC

Query:  VADVQFKGRG
        VADVQFKGRG
Subjt:  VADVQFKGRG

XP_023549815.1 LOW QUALITY PROTEIN: biotin--protein ligase 1, chloroplastic-like [Cucurbita pepo subsp. pepo]4.0e-3479.61Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA-------ISCNSNFDLPLGTVCVADVQFK
        MD SPTCAL LSGKTAADNET KLLKRNDT KLPD TEISVFLHSERDEFLEE GFRIDSYLNALSTNTF        I  ++  D+PLGTVCVADVQFK
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA-------ISCNSNFDLPLGTVCVADVQFK

Query:  GRG
        GRG
Subjt:  GRG

TrEMBL top hitse value%identityAlignment
A0A1S3BH31 biotin--protein ligase 2-like isoform X41.2e-2866.36Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC
        MD SPTC+L LSGKTAA+NET KLLKRNDTLKLPD TEISV LHSE+D+ LEE GFRID YLNALST+TF               +  ++  +LPLG VC
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC

Query:  VADVQFKGRG
        VADVQFKGRG
Subjt:  VADVQFKGRG

A0A1S3BIK3 biotin--protein ligase 2-like isoform X31.2e-2866.36Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC
        MD SPTC+L LSGKTAA+NET KLLKRNDTLKLPD TEISV LHSE+D+ LEE GFRID YLNALST+TF               +  ++  +LPLG VC
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC

Query:  VADVQFKGRG
        VADVQFKGRG
Subjt:  VADVQFKGRG

A0A1S4DWK7 biotin--protein ligase 2-like isoform X11.2e-2866.36Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC
        MD SPTC+L LSGKTAA+NET KLLKRNDTLKLPD TEISV LHSE+D+ LEE GFRID YLNALST+TF               +  ++  +LPLG VC
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC

Query:  VADVQFKGRG
        VADVQFKGRG
Subjt:  VADVQFKGRG

A0A5A7U4Q8 Biotin--protein ligase 2-like isoform X21.2e-2866.36Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC
        MD SPTC+L LSGKTAA+NET KLLKRNDTLKLPD TEISV LHSE+D+ LEE GFRID YLNALST+TF               +  ++  +LPLG VC
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC

Query:  VADVQFKGRG
        VADVQFKGRG
Subjt:  VADVQFKGRG

A0A5D3CBB7 Biotin--protein ligase 2-like isoform X11.2e-2866.36Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC
        MD SPTC+L LSGKTAA+NET KLLKRNDTLKLPD TEISV LHSE+D+ LEE GFRID YLNALST+TF               +  ++  +LPLG VC
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGTVC

Query:  VADVQFKGRG
        VADVQFKGRG
Subjt:  VADVQFKGRG

SwissProt top hitse value%identityAlignment
F4I4W2 Biotin--protein ligase 28.9e-1333.04Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFL--EEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGT
        MD   +C+L L GK++ + +T   LK N+ LKLPD++++S+FL SE    +  ++  F +  ++N++ST+ F               +  ++  ++P+G+
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFL--EEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGT

Query:  VCVADVQFKGRG
        VCV+D+Q KGRG
Subjt:  VCVADVQFKGRG

Q9SL92 Biotin--protein ligase 1, chloroplastic4.4e-1233.04Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFL--EEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGT
        M++  +C+L L GK++ + E  K LK  ++LKLPD+T++S+ L SE    +  ++  F +  ++N++ T+ F               +  ++  +LP+G+
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFL--EEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGT

Query:  VCVADVQFKGRG
        VCV D+QFKGRG
Subjt:  VCVADVQFKGRG

Arabidopsis top hitse value%identityAlignment
AT1G37150.2 holocarboxylase synthetase 26.3e-1433.04Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFL--EEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGT
        MD   +C+L L GK++ + +T   LK N+ LKLPD++++S+FL SE    +  ++  F +  ++N++ST+ F               +  ++  ++P+G+
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFL--EEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGT

Query:  VCVADVQFKGRG
        VCV+D+Q KGRG
Subjt:  VCVADVQFKGRG

AT1G37150.3 holocarboxylase synthetase 26.3e-1433.04Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFL--EEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGT
        MD   +C+L L GK++ + +T   LK N+ LKLPD++++S+FL SE    +  ++  F +  ++N++ST+ F               +  ++  ++P+G+
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFL--EEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGT

Query:  VCVADVQFKGRG
        VCV+D+Q KGRG
Subjt:  VCVADVQFKGRG

AT2G25710.1 holocarboxylase synthase 13.1e-1333.04Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFL--EEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGT
        M++  +C+L L GK++ + E  K LK  ++LKLPD+T++S+ L SE    +  ++  F +  ++N++ T+ F               +  ++  +LP+G+
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFL--EEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGT

Query:  VCVADVQFKGRG
        VCV D+QFKGRG
Subjt:  VCVADVQFKGRG

AT2G25710.2 holocarboxylase synthase 13.1e-1333.04Show/hide
Query:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFL--EEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGT
        M++  +C+L L GK++ + E  K LK  ++LKLPD+T++S+ L SE    +  ++  F +  ++N++ T+ F               +  ++  +LP+G+
Subjt:  MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFL--EEIGFRIDSYLNALSTNTFA--------------ISCNSNFDLPLGT

Query:  VCVADVQFKGRG
        VCV D+QFKGRG
Subjt:  VCVADVQFKGRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACACCAGTCCAACCTGTGCGTTGTTCTTGAGTGGAAAAACGGCGGCTGACAATGAAACTGTCAAATTGCTCAAGAGGAATGACACTTTGAAGCTCCCTGACCATAC
TGAAATTTCGGTTTTCTTGCATTCAGAAAGGGATGAATTCCTGGAGGAAATTGGGTTTCGAATTGATTCGTATTTGAATGCTCTTTCTACCAATACTTTCGCTATCTCTT
GTAACAGCAACTTCGACCTTCCCCTGGGTACAGTCTGCGTGGCTGATGTTCAGTTCAAGGGAAGAGGGTTTCGAGCTCTCGAGGAACTCTACTATCAGACATGGTTGCAC
AGATATGATCTTGTTACATCTGTCTATGTAGTGGGCAAAGAGTTATTGTACAGGAAAAGAAAGATGATCAAGAAGTGGAAAATGTTGTCACTATTCAGCTTATTTGAACT
TTACAACTGTGAATTGAGTGAAAAAGAAACAGAAGGGCAAAAGATTCTTGTGGCGAGGCGCCATGTCAGACCCAGAAACTGCAGTGGCAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACACCAGTCCAACCTGTGCGTTGTTCTTGAGTGGAAAAACGGCGGCTGACAATGAAACTGTCAAATTGCTCAAGAGGAATGACACTTTGAAGCTCCCTGACCATAC
TGAAATTTCGGTTTTCTTGCATTCAGAAAGGGATGAATTCCTGGAGGAAATTGGGTTTCGAATTGATTCGTATTTGAATGCTCTTTCTACCAATACTTTCGCTATCTCTT
GTAACAGCAACTTCGACCTTCCCCTGGGTACAGTCTGCGTGGCTGATGTTCAGTTCAAGGGAAGAGGGTTTCGAGCTCTCGAGGAACTCTACTATCAGACATGGTTGCAC
AGATATGATCTTGTTACATCTGTCTATGTAGTGGGCAAAGAGTTATTGTACAGGAAAAGAAAGATGATCAAGAAGTGGAAAATGTTGTCACTATTCAGCTTATTTGAACT
TTACAACTGTGAATTGAGTGAAAAAGAAACAGAAGGGCAAAAGATTCTTGTGGCGAGGCGCCATGTCAGACCCAGAAACTGCAGTGGCAAGTAA
Protein sequenceShow/hide protein sequence
MDTSPTCALFLSGKTAADNETVKLLKRNDTLKLPDHTEISVFLHSERDEFLEEIGFRIDSYLNALSTNTFAISCNSNFDLPLGTVCVADVQFKGRGFRALEELYYQTWLH
RYDLVTSVYVVGKELLYRKRKMIKKWKMLSLFSLFELYNCELSEKETEGQKILVARRHVRPRNCSGK