; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh15G007350 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G007350
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontransmembrane protein 50A-like
Genome locationCmo_Chr15:3598749..3602054
RNA-Seq ExpressionCmoCh15G007350
SyntenyCmoCh15G007350
Gene Ontology termsGO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007919 - Uncharacterised protein family UPF0220


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140320.1 transmembrane protein 50A [Cucumis sativus]9.9e-7097.78Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFAS AALMFNCVR+EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVVK GPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_008460472.1 PREDICTED: transmembrane protein 50A [Cucumis melo]2.6e-7098.52Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFAS AALMFNCVR+EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_022938351.1 transmembrane protein 50A-like [Cucurbita moschata]4.0e-71100Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_022993057.1 transmembrane protein 50A [Cucurbita maxima]1.2e-7099.26Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFAS AALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_038874577.1 transmembrane protein 50A [Benincasa hispida]3.4e-7097.78Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFAS AALMFNCVR+EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

TrEMBL top hitse value%identityAlignment
A0A1S3CCJ8 transmembrane protein 50A1.3e-7098.52Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFAS AALMFNCVR+EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

A0A6J1CJN8 transmembrane protein 50A6.3e-7097.04Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFAS AALMFNCVR+EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        S+VKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

A0A6J1FCW9 transmembrane protein 50A-like2.0e-71100Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

A0A6J1JRP9 transmembrane protein 50A5.7e-7199.26Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFAS AALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

D6BRE9 Transmembrane protein 50a, putative2.0e-6893.33Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELW+IFGPGVAGAVFG GWWFW+DAVVCSSV VSFVHYLPGIFAS AALMFNCVR+EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        S+VKTGPSVWTG AGVLQCVFVL+SGLIYWTSHSE
Subjt:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

SwissProt top hitse value%identityAlignment
O95807 Transmembrane protein 50A3.2e-1032.54Show/hide
Query:  AGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASIAALMFNCVRREDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSV
        AG +F  GWW  +DA V       F H  +  G+ A+IA LM N V    +    Y E   G+   ++WLF  ++++F SL AS+ +L    V K    V
Subjt:  AGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASIAALMFNCVRREDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSV

Query:  WTGVAGVLQCVFVLVSGLIYWTSHSE
        + G+A   Q  F+   GL++    +E
Subjt:  WTGVAGVLQCVFVLVSGLIYWTSHSE

P56557 Transmembrane protein 50B2.5e-0729.29Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASIAALMFNCVRREDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG
        +D +E  +     VAG +F  GWW  +DA V         H  +  G+F+++A  M N V    +    YE    G    ++WLF  +++ F SL AS+ 
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASIAALMFNCVRREDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG

Query:  LLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        +L   + V     V+ G+A   Q   +  S LIY    +E
Subjt:  LLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

Q3SZL9 Transmembrane protein 50B2.5e-0729.29Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASIAALMFNCVRREDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG
        +D +E  +     VAG +F  GWW  +DA V         H  +  G+F+++A  M N V    +    YE    G    ++WLF  +++ F SL AS+ 
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASIAALMFNCVRREDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG

Query:  LLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        +L   + V     V+ G+A   Q   +  S LIY    +E
Subjt:  LLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

Q54T60 Transmembrane protein 50 homolog1.0e-0825.76Show/hide
Query:  PGVAGAVFGAGWWFWVDAVVCSSV----------AVSFVHYLPGIFASIAALMFNCVRREDIDYSP--YEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQ
        P +AG +F AGW+ W+D  V  +            + +++YLPGIFA++  +M N V    ++ +   ++ G  ++++WLF ++ +SF  + A++ +++ 
Subjt:  PGVAGAVFGAGWWFWVDAVVCSSV----------AVSFVHYLPGIFASIAALMFNCVRREDIDYSP--YEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQ

Query:  DSVV---KTGPSVWTGVAGVLQCVFVLVSGLI
          +        + W G+A  LQ   + +S L+
Subjt:  DSVV---KTGPSVWTGVAGVLQCVFVLVSGLI

Q9CXL1 Transmembrane protein 50A1.9e-1031.43Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASIAALMFNCVRREDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG
        MD  E  +      AG +F  GWW  +DA V       F H  +  G+ A+IA LM N V    +    Y E   G+   ++WLF  ++++F SL AS+ 
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASIAALMFNCVRREDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG

Query:  LLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        +L    V K    V+ G+A   Q  F+   GL++    +E
Subjt:  LLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

Arabidopsis top hitse value%identityAlignment
AT1G36980.1 unknown protein2.6e-6887.41Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELW+IFGPG +GAVFG GWWFWVDAVVCSS+ V FVHYLPGIFAS+ ALMFNCVR+EDIDYSPY+EGEWRLKLWLF AYVV+FVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVVKTGPS WTGVAGV QCVFVL+SGL+YWTSHSE
Subjt:  SVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCTGGCGTCGCCGGAGCTGTGTTTGGTGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTT
GCAGTTTCCTTCGTCCACTACCTCCCAGGTATTTTTGCTTCTATTGCGGCTTTGATGTTCAATTGCGTTCGCAGAGAAGACATCGATTATTCTCCATATGAGGAG
GGCGAATGGAGATTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCAGTAGTAAAAACA
GGGCCATCAGTGTGGACAGGAGTCGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTACTGGACTTCTCACTCGGAGTAA
mRNA sequenceShow/hide mRNA sequence
TGAAGATCGATGGGAGCTGTGCTGTCATTCAGTTCATATTAGCTTTTCCAAATCGTCCCGTCTCAAATCTCTAGCGCAAGGAGAAGGCAAAAGAAAGGAGCCACA
AATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCTGGCGTCGCCGGAGCTGTGTTTGGTGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGT
TGCAGTTTCCTTCGTCCACTACCTCCCAGGTATTTTTGCTTCTATTGCGGCTTTGATGTTCAATTGCGTTCGCAGAGAAGACATCGATTATTCTCCATATGAGGA
GGGCGAATGGAGATTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCAGTAGTAAAAAC
AGGGCCATCAGTGTGGACAGGAGTCGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTACTGGACTTCTCACTCGGAGTAAGACGTAAGAGG
CTGAAGAATTACCAACTTCATATAGCTCCAGTGGACTGCAGACTACAGTGTGAGTCATTTGTGTGTATCATTTGACTTTTCCAACTATGGAACCAAAGGGCTTTT
CTACTTGTAAATGTCATGTTAATTTCAAGCTGAAACCATGTCTATATGTCTTTATGCATTCAATATAAGTGAGTCAGATATTCAATCTTTCAGCCATTTCAGCTT
TGTTGGTTTCATTTTTGTTCTTTTTTCCCTTCAAAACTGCTGTGAATTGAAGAAAATGAAAATATATATATAAACTTCGATAAAGTTCGA
Protein sequenceShow/hide protein sequence
MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKT
GPSVWTGVAGVLQCVFVLVSGLIYWTSHSE