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CmoCh15G007680 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G007680
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpentatricopeptide repeat-containing protein At1g66345, mitochondrial
Genome locationCmo_Chr15:3770496..3772468
RNA-Seq ExpressionCmoCh15G007680
SyntenyCmoCh15G007680
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602029.1 DELLA protein GAI, partial [Cucurbita argyrosperma subsp. sororia]1.0e-0972Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQ
        M+ARLL PGVSVFFALIGS CQSGKLEEAEKYLKIMKD   ++    L++
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQ
KAG7016556.1 hypothetical protein SDJN02_21665, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-20100Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEG
        MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEG
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEG
KAG7032723.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]4.5e-1067.74Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGYTFERNRA
        M+ARLL PGVSVFFALIGS CQSGKLEEAEKYLKIMKD S   S      L   Y  + NRA
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGYTFERNRA
XP_008460528.1 PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Cucumis melo]3.5e-1090Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
        MEARLL PG+SVFFALIGSLCQSG+LEEAEKYLKI+KDSS
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
XP_022961108.1 pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Cucurbita moschata]4.5e-1067.74Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGYTFERNRA
        M+ARLL PGVSVFFALIGS CQSGKLEEAEKYLKIMKD S   S      L   Y  + NRA
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGYTFERNRA
TrEMBL top hitse value%identityAlignment
A0A0A0KRP7 Uncharacterized protein8.3e-1090Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
        M ARLL PGVSVFFALIGSLCQSG+LEEAEKYLKI+KDSS
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
A0A1S3CCN8 pentatricopeptide repeat-containing protein At1g66345, mitochondrial1.7e-1090Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
        MEARLL PG+SVFFALIGSLCQSG+LEEAEKYLKI+KDSS
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
A0A5D3DTQ8 Pentatricopeptide repeat-containing protein1.7e-1090Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
        MEARLL PG+SVFFALIGSLCQSG+LEEAEKYLKI+KDSS
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSS
A0A6J1HAX5 pentatricopeptide repeat-containing protein At1g66345, mitochondrial2.2e-1067.74Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGYTFERNRA
        M+ARLL PGVSVFFALIGS CQSGKLEEAEKYLKIMKD S   S      L   Y  + NRA
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGYTFERNRA
A0A6J1JRQ4 pentatricopeptide repeat-containing protein At1g66345, mitochondrial6.4e-1066.13Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGYTFERNRA
        M+ARLL PGVSVFFALIGS CQSGKLEEAEKY KIMKD S   S      L   Y  + NRA
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGYTFERNRA
SwissProt top hitse value%identityAlignment
Q3ECH5 Pentatricopeptide repeat-containing protein At1g66345, mitochondrial5.0e-0459.46Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMK
        ME R + PG  VF +LI  LC  GK+E  EKYLKIMK
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMK
Arabidopsis top hitse value%identityAlignment
AT1G66345.1 Pentatricopeptide repeat (PPR) superfamily protein3.6e-0559.46Show/hide
Query:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMK
        ME R + PG  VF +LI  LC  GK+E  EKYLKIMK
Subjt:  MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMK
AT3G07290.1 Pentatricopeptide repeat (PPR) superfamily protein5.2e-0437.5Show/hide
Query:  PGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGY
        P V  +  +I  LCQ G++EEAEK L  M+DS  + +++    + +GY
Subjt:  PGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCAAGATTACTATGTCCTGGAGTGTCAGTTTTCTTTGCACTCATTGGGAGCCTTTGTCAATCTGGGAAATTGGAGGAAGCAGAGAAATATTTGAAGATCATGAA
AGATAGTTCTACCAATATATCAAACATTAACCTTGTTCAACTTGAAGAAGGCTACACGTTTGAAAGAAATCGAGCCATTGGAGCAAAACAAATGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCAAGATTACTATGTCCTGGAGTGTCAGTTTTCTTTGCACTCATTGGGAGCCTTTGTCAATCTGGGAAATTGGAGGAAGCAGAGAAATATTTGAAGATCATGAA
AGATAGTTCTACCAATATATCAAACATTAACCTTGTTCAACTTGAAGAAGGCTACACGTTTGAAAGAAATCGAGCCATTGGAGCAAAACAAATGATTTGAAGGAATGATT
CAATTGGCCAAAAAATGGGTGAACAGATATCCAATCAAGGAAGTCCGAAGACCGAAAGGAGCAGCGTGAATTGTTGCCCAAACCGAAGCCAAAAAGCAGTCAAGGCAGCA
ATGAGACGCCACTGAAGAGAGTTGCAATGGTGTTTGTAAAAGCCTAAACTCCTAGTAGGAGACATTGTCCTCTTTGTGCTTCCTTTATGAACTTCCTCAAGGTTTTGAAA
CGTGTATGCTATGGAGAGATTTCCATACACTTATATGGAGAATGTTTCGTCACTTCTCCAACCGATGTGGAATTTCACCATTCATCCCTTTGGGGATCCATCATCCTCGG
TTCATGCCATCCCATAC
Protein sequenceShow/hide protein sequence
MEARLLCPGVSVFFALIGSLCQSGKLEEAEKYLKIMKDSSTNISNINLVQLEEGYTFERNRAIGAKQMI