; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh15G008300 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G008300
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S27
Genome locationCmo_Chr15:4194355..4204035
RNA-Seq ExpressionCmoCh15G008300
SyntenyCmoCh15G008300
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000592 - Ribosomal protein S27
IPR007206 - Protein HGH1 C-terminal
IPR011332 - Zinc-binding ribosomal protein
IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOA24972.1 hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]2.7e-4276.52Show/hide
Query:  EDEQNPKVMEAY------------ERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG
        +   NP++  AY            E +  +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG
Subjt:  EDEQNPKVMEAY------------ERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG

Query:  RARLTEGCSFRRKGD
        +ARLTEGCSFRRKGD
Subjt:  RARLTEGCSFRRKGD

EPS65822.1 hypothetical protein M569_08957 [Genlisea aurea]2.1e-4282.69Show/hide
Query:  YEDEQNPKVMEAYERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFR
        +   ++ K + +  R  ++VL NDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFR
Subjt:  YEDEQNPKVMEAYERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFR

Query:  RKGD
        RKGD
Subjt:  RKGD

EXB94378.1 40S ribosomal protein S27-2 [Morus notabilis]2.1e-4275.41Show/hide
Query:  AGRRAFWSINGPRILQVGYEDEQNPKVMEAYERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTV
        A RR      G      G     +P +    ER    VLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTV
Subjt:  AGRRAFWSINGPRILQVGYEDEQNPKVMEAYERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTV

Query:  LCQPTGGRARLTEGCSFRRKGD
        LCQPTGGRARLTEGCSFRRKGD
Subjt:  LCQPTGGRARLTEGCSFRRKGD

QHO56724.1 40S ribosomal protein [Arachis hypogaea]2.1e-4275.2Show/hide
Query:  DAGRRAFWSINGP--RILQVGYEDEQNPKVMEAYERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
        D GR  F  + GP  R+L  G           A     S+VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Subjt:  DAGRRAFWSINGP--RILQVGYEDEQNPKVMEAYERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC

Query:  QTVLCQPTGGRARLTEGCSFRRKGD
        QTVLCQPTGG+ARLTEGCSFR+KGD
Subjt:  QTVLCQPTGGRARLTEGCSFRRKGD

RYR43016.1 hypothetical protein Ahy_A08g039444 isoform A [Arachis hypogaea]1.6e-4297.73Show/hide
Query:  GSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        G LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFR+KGD
Subjt:  GSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

TrEMBL top hitse value%identityAlignment
A0A445BWT3 40S ribosomal protein S277.7e-4397.73Show/hide
Query:  GSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        G LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFR+KGD
Subjt:  GSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

A0A6J1JTM3 40S ribosomal protein S273.8e-4298.84Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

R0FQY1 40S ribosomal protein S27 (Fragment)1.3e-4276.52Show/hide
Query:  EDEQNPKVMEAY------------ERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG
        +   NP++  AY            E +  +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG
Subjt:  EDEQNPKVMEAY------------ERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG

Query:  RARLTEGCSFRRKGD
        +ARLTEGCSFRRKGD
Subjt:  RARLTEGCSFRRKGD

S8E0G1 40S ribosomal protein S271.0e-4282.69Show/hide
Query:  YEDEQNPKVMEAYERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFR
        +   ++ K + +  R  ++VL NDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFR
Subjt:  YEDEQNPKVMEAYERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFR

Query:  RKGD
        RKGD
Subjt:  RKGD

W9RJV2 40S ribosomal protein S271.0e-4275.41Show/hide
Query:  AGRRAFWSINGPRILQVGYEDEQNPKVMEAYERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTV
        A RR      G      G     +P +    ER    VLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTV
Subjt:  AGRRAFWSINGPRILQVGYEDEQNPKVMEAYERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTV

Query:  LCQPTGGRARLTEGCSFRRKGD
        LCQPTGGRARLTEGCSFRRKGD
Subjt:  LCQPTGGRARLTEGCSFRRKGD

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-15.3e-4191.67Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+A+LTEGCSFR+K
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK

P47903 40S ribosomal protein S271.8e-3683.72Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        +VL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C +VLC PTG   RLTEGCSFRRK D
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Q8L953 40S ribosomal protein S27-36.9e-4192.86Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        +VLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARL EGCSFR+K
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK

Q96564 40S ribosomal protein S273.1e-4193.02Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        +VLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQTVLCQPTGG+ARLTEGCSFRRKGD
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Q9M2F1 40S ribosomal protein S27-26.7e-4495.35Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+A+LTEGCSFRRKGD
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Arabidopsis top hitse value%identityAlignment
AT1G14300.1 ARM repeat superfamily protein9.0e-2872.37Show/hide
Query:  MPLELGTALSIEREQIDDPEIRVQALEAIYMIILQDAGRRAFWSINGPRILQVGYEDEQNPKVMEAYERVGSLVLQ
        MP ELG+ALSIERE + DP+IRVQ LEAIY+IIL++AGRRAFWS+NGPRILQ+GYE E++PK M AYE+VGSL+++
Subjt:  MPLELGTALSIEREQIDDPEIRVQALEAIYMIILQDAGRRAFWSINGPRILQVGYEDEQNPKVMEAYERVGSLVLQ

AT2G45710.1 Zinc-binding ribosomal protein family protein3.8e-4291.67Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+A+LTEGCSFR+K
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK

AT3G61110.1 ribosomal protein S274.7e-4595.35Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+A+LTEGCSFRRKGD
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

AT3G61111.1 Zinc-binding ribosomal protein family protein3.1e-3680.23Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        +VLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG CQ VLCQPTGG+A+LT GCSFR+  D
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

AT5G47930.1 Zinc-binding ribosomal protein family protein4.9e-4292.86Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        +VLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARL EGCSFR+K
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACTTGAGCTTGGTACTGCACTCTCAATTGAGCGCGAGCAAATCGATGACCCTGAAATTCGAGTTCAAGCGTTGGAGGCTATATACATGATCATATTACAGGATGC
TGGCCGGAGAGCATTCTGGTCCATCAACGGACCAAGAATACTGCAAGTGGGTTATGAAGACGAGCAAAACCCAAAAGTAATGGAAGCATATGAGAGAGTTGGCTCCCTGG
TTCTCCAAAACGATATTGATTTGCTGAATCCTCCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGCCTTGTGCAATCACCCAACTCCTTCTTCATGGATGTTAAG
TGCCAGGGATGCTTCAACATTACCACTGTCTTCAGCCACTCACAAACTGTTGTGGTATGCGGTAACTGCCAGACAGTCTTATGCCAGCCAACTGGTGGGCGCGCTAGACT
CACCGAGGGATGTTCGTTCAGGAGAAAGGGTGATTGA
mRNA sequenceShow/hide mRNA sequence
GCCCATTTATCAACAGCCCCCACGCATCAGTGCGAGGTTTTAGGGTTCTTGCTCCCTCCCTCTGTTTTTGTTCGGCTTCGCAGGATTTCCGTTCTTCACCGGTCCCTTTC
CAGGGGATTTTCAATATGAGTTTTGTAATTTGAAAAAGGGCAATTCCACTCATCGGAGAAGAAACACCCTTCTTCAGCAACAAAGAGCATATGGCGACTGAACTAGAAGA
ATTGATACAGTTTCTCTCTTCGCCCTCACCTCAATTGAGGAAAGGAGCCATAGATATTGTTCAAGGTTTAACTGGGTCTGAGGATGGGCTGCAGTCTCTTGCCAAGTATC
CAACCGTTCTGCTACCGTCATTAGCTCGACTCTTGAGAGAACAAAAGGATGTTGCAGAACCTGCAGCTGAAGCTCTTGTTAATCTTTCACAAAATTCTGATCTAGCTGCA
AAGATGATAGAATTGGGACTGATTGGAGCAGTTATGGATCTTTTGTATAATGTGGACTCCAGCATTAGACAGTTGCTAGTAATGTTTCTGGTTAATTTAACACAGTTGGA
TGTTGGTATTGCCTCGTTACTGCAGACTGGAGATGACAAGATGCAAGGTCTCTATGTTATGAAGATTGTCAGATCATTTTGTCGTTCGGAAAGCGAATCCAGTGATGATC
CCTTTGAGCATGTGGCTTCCATACTTGTGAACATATCAAAGAAGGAAGCTGGAAGGAAGCTTTTACTTGATCCAAAGCGGGGACTTTTGAAGCAGATAATTAGGCAGTAT
GATTCGACTAGTCAACTTCGGAAGAATGGAGTAAGTCCGATGGATGTCTAAAGAAGTTCAAGCTTCTAAACGAGGTATTTGGAACTCTCAGAAATTGTTGCTTTGAAGCA
GAAGGCCAGTTGCAAAATTTACTCTTGATAGCGGAGTTCCTTTGGCCAGCTTTACTTCTCCCTGTTGCTGGGAACAAGGTTTACAAGGAGGAGGATACATCAAAAATGCC
ACTTGAGCTTGGTACTGCACTCTCAATTGAGCGCGAGCAAATCGATGACCCTGAAATTCGAGTTCAAGCGTTGGAGGCTATATACATGATCATATTACAGGATGCTGGCC
GGAGAGCATTCTGGTCCATCAACGGACCAAGAATACTGCAAGTGGGTTATGAAGACGAGCAAAACCCAAAAGTAATGGAAGCATATGAGAGAGTTGGCTCCCTGGTTCTC
CAAAACGATATTGATTTGCTGAATCCTCCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGCCTTGTGCAATCACCCAACTCCTTCTTCATGGATGTTAAGTGCCA
GGGATGCTTCAACATTACCACTGTCTTCAGCCACTCACAAACTGTTGTGGTATGCGGTAACTGCCAGACAGTCTTATGCCAGCCAACTGGTGGGCGCGCTAGACTCACCG
AGGGATGTTCGTTCAGGAGAAAGGGTGATTGAAGATGCGGGTCCTTGTTTCTTTTCACTGGGATGAAATGACAGTCTCTGTTTTGATCATGGTATATTTATTTTTCGTGT
ACGGTACCAGACTTGATTATGCTCTCTCCTAAATTGATTATATTTGGCTTTAGAGATTTCTGGTTTTGTTTAAAAGATGAATTTCATGTACTGAACTTTTAGCAGCATTT
AGTAATTCTTAGCTTTCTTTTATCTACCCCATACTTTGTTAAATTTGAGTGGAATAGTTTTGCATCAAAATCCCTTCTTAACCCTCTTAAGTGATTGAATATCCATGTTC
TGCTGGGATTACTCTTACCCTCTTCCATTTACTCACTCTAGTCAAGGGTTGTTGTATCGTTATCTTCGAGCTTGAAAGAAAATATCTCAAGGTCACTCACAACTCTTTGG
CTTATTGTAATTTGTATTTTACAAGAATGTCATTGGCATTCGTATAAGCAACAAGTGTGGCACGAGGATTTGAGCTTATGAACTGCATGTATTGAGGCTCGATAGAAGGG
ATAGTCTCGGAGGAAATGATAATATGTTATGATGGTATGTCACAAACTGCATTACACATTCTTATCTTTACAAGCCATAAGAATTAG
Protein sequenceShow/hide protein sequence
MPLELGTALSIEREQIDDPEIRVQALEAIYMIILQDAGRRAFWSINGPRILQVGYEDEQNPKVMEAYERVGSLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVK
CQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD