; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh15G008890 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G008890
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionribonuclease P protein subunit p38
Genome locationCmo_Chr15:4496344..4499899
RNA-Seq ExpressionCmoCh15G008890
SyntenyCmoCh15G008890
Gene Ontology termsGO:0043232 - intracellular non-membrane-bounded organelle (cellular component)
InterPro domainsIPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579150.1 hypothetical protein SDJN03_23598, partial [Cucurbita argyrosperma subsp. sororia]9.5e-8699.41Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL
        MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPS DSARIVNPNYKACTVRLQAILL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
        TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT

XP_022938626.1 ribonuclease P protein subunit p38 [Cucurbita moschata]1.1e-86100Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL
        MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
        TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT

XP_022993803.1 ribonuclease P protein subunit p38 [Cucurbita maxima]1.2e-8095.86Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL
        MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRAR LNA+SLPEKIWLKKQFAIGVNEVTRVLERMTPS DSAR +NPNYKACTVRLQAILL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
        TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSPVNQLIGEIL RTT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT

XP_023549838.1 ribonuclease P protein subunit p38 [Cucurbita pepo subsp. pepo]2.8e-8598.22Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL
        MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAE+LPEKIWLKKQFAIGVNEVTRVLERMTPS DSARIVNPNYKACTVRLQAILL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
        TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSP+NQLIGEILQRTT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT

XP_038875290.1 ribonuclease P protein subunit p38 [Benincasa hispida]2.5e-7891.72Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL
        MGKKAKSS P AV+QSK NEDSYEGERLDE LQSIQREIK AR LNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARI+NPNYKACTV+LQA+LL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
        TA+CNPRWLTNHVPSLA+SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLI EILQR T
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT

TrEMBL top hitse value%identityAlignment
A0A1S3CQV2 ribonuclease P protein subunit p38 isoform X51.6e-7085.88Show/hide
Query:  MGKKAKSSG-PVAVVQSKRNED-SYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAI
        MGK  KSS  PVA +QSK  ED SYEGERLDELL SIQREIK AR LNAESLPEK WLKKQFAIGVNEVTR LERMTP GDSAR++NPNYKAC V+LQAI
Subjt:  MGKKAKSSG-PVAVVQSKRNED-SYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAI

Query:  LLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRT
        LLTA+CNPRWLTNHVP LA+SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+NGSPVNQLI EILQRT
Subjt:  LLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRT

A0A1S3CR39 ribonuclease P protein subunit p38 isoform X66.4e-7286.39Show/hide
Query:  MGKKAKSSG-PVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAIL
        MGK  KSS  PVA +QSK  EDSYEGERLDELL SIQREIK AR LNAESLPEK WLKKQFAIGVNEVTR LERMTP GDSAR++NPNYKAC V+LQAIL
Subjt:  MGKKAKSSG-PVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAIL

Query:  LTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRT
        LTA+CNPRWLTNHVP LA+SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+NGSPVNQLI EILQRT
Subjt:  LTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRT

A0A6J1CZ90 ribonuclease P protein subunit p385.8e-7385.12Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL
        MGKKAKSS    VV+SK ++D YEG+RLDELLQSIQREIKRAR LNAESLP KIWLKKQFA+GVNEVTRVLERMTPSGDSARI+NPNYKACTVRLQAILL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRT
          DCNPRWLTNH+P+LA+SR VPL+L+KDKEGSLRLGELVNLKTAIAIGIKANGS +NQLIGEILQ T
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRT

A0A6J1FDN9 ribonuclease P protein subunit p385.4e-87100Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL
        MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
        TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT

A0A6J1K3C5 ribonuclease P protein subunit p385.8e-8195.86Show/hide
Query:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL
        MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRAR LNA+SLPEKIWLKKQFAIGVNEVTRVLERMTPS DSAR +NPNYKACTVRLQAILL
Subjt:  MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT
        TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSPVNQLIGEIL RTT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT

SwissProt top hitse value%identityAlignment
P78345 Ribonuclease P protein subunit p388.5e-0530.36Show/hide
Query:  LKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGS
        ++KQ AIGVNEVTR LER                     L  +L+     P  +T+H+  L++SR VP   V     S R+  ++ LK  +A+  K N +
Subjt:  LKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGS

Query:  PVNQLIGEILQR
             +  I+ R
Subjt:  PVNQLIGEILQR

Q32LC1 Ribonuclease P protein subunit p385.0e-0532.14Show/hide
Query:  LKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGS
        ++KQ AIG+NEVTR LER                     L   L      P  +T+H+  L++SR VP   V     S RL  ++ LK  +A+G K N +
Subjt:  LKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGS

Query:  PVNQLIGEILQR
           + +  IL R
Subjt:  PVNQLIGEILQR

Q80UU2 Ribonuclease P protein subunit p385.5e-0431Show/hide
Query:  IWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKAN
        + ++KQ  IGVNEVTR LER                     L  +L+     P  +T+H+  L++SR VP   V   + S R+  ++ LK  +A+G + N
Subjt:  IWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKAN

Arabidopsis top hitse value%identityAlignment
AT4G01790.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.3e-4057.62Show/hide
Query:  RNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLA
        +  D YEGERL  LL  IQR I+ ++  N  SLPEKIWLKKQ AIG+NEVTRVLERM P+  S +  NP       +LQ ++L ADC PR LT H+P+LA
Subjt:  RNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLA

Query:  ISRKVPLILVKD-KEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQR
         SR VP++ V+D K  SLRLGELV LKTA+AIGIKA G+ +N L+ +IL R
Subjt:  ISRKVPLILVKD-KEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCCAAGCGTAACGAAGATTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATT
CAGAGGGAGATAAAGAGAGCAAGATGTCTGAATGCGGAATCCTTGCCGGAAAAAATTTGGCTCAAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTC
CTTGAACGGATGACGCCAAGTGGAGATTCTGCTCGCATAGTGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGCTATACTTTTAACTGCTGATTGCAAC
CCTCGATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAGCTCGTT
AACCTTAAAACAGCAATTGCTATTGGAATAAAGGCGAATGGGAGCCCTGTTAATCAACTTATTGGTGAAATTCTTCAAAGAACAACATAA
mRNA sequenceShow/hide mRNA sequence
CTTGAGTGGGTCGTGGAGGAGGCAGTAGTTCGTCCAGTTCCAGTACGGCGTTAGTCCAATCGGAGAACGCCGCTGCTATTTCTCTCAAGCTACACTTTCGAGCAA
GTTTTCAGGCATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCCAAGCGTAACGAAGATTCCTACGAAGGGGAACGTCTCGATGAGTTGCT
GCAGTCGATTCAGAGGGAGATAAAGAGAGCAAGATGTCTGAATGCGGAATCCTTGCCGGAAAAAATTTGGCTCAAGAAACAATTTGCAATTGGAGTTAATGAGGT
TACTAGAGTCCTTGAACGGATGACGCCAAGTGGAGATTCTGCTCGCATAGTGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGCTATACTTTTAACTGC
TGATTGCAACCCTCGATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGG
TGAGCTCGTTAACCTTAAAACAGCAATTGCTATTGGAATAAAGGCGAATGGGAGCCCTGTTAATCAACTTATTGGTGAAATTCTTCAAAGAACAACATAAAAACA
CATCGCAGAATACAACAAAGTTGTCTGGTGTACAGTAAAAATGGTATGAAGTAGGAGCAAATTCTTGTCCTGATTTCTAGTTCGTGCTGATTCACTCTTGATAAT
GGCCGCCACTTTTAATATCCTTATGAAGAATGTTTGCATGAGATGGTAGGATAGCAATTCTTATGGTAGGATAGCAATTCTTATGTAATACATTGGGGGATTCCA
AATTGCGTGCGGAGTTTAAATAGTGTTGTTATTGTGGCTGTTTGAAATGCCTTTAATTGTTTAGGCAAGGCGTCTTTTTAGGGAAATCTTCGGTGTATATTCCCA
TTTCAACTCAATATTTTTTACAATGA
Protein sequenceShow/hide protein sequence
MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILLTADCN
PRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT