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CmoCh15G009640 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G009640
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S rib s in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Genome locationCmo_Chr15:5035006..5035461
RNA-Seq ExpressionCmoCh15G009640
SyntenyCmoCh15G009640
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579218.1 hypothetical protein SDJN03_23666, partial [Cucurbita argyrosperma subsp. sororia]3.8e-7897.35Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKN+DDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVC+KKADDHIGSAG KPGSPRP WTGFRYKYLLQKTWRPVLAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE

KAG7016730.1 hypothetical protein SDJN02_21840, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-7898.01Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKN+DDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVCKKKADDHIGSAG KPGSPRP WTGFRYKYLLQKTWRPVLAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE

XP_022939363.1 uncharacterized protein LOC111445302 [Cucurbita moschata]6.3e-81100Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE

XP_022994049.1 uncharacterized protein LOC111489857 [Cucurbita maxima]2.0e-7998.01Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDL+RGNKLKDLFVSSPPYDGTD RINETAIAAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVCKKKA+DHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE

XP_023550276.1 uncharacterized protein LOC111808499 [Cucurbita pepo subsp. pepo]6.9e-8098.68Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAP 
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVCKKKADDHIGS GCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE

TrEMBL top hitse value%identityAlignment
A0A0A0KPK6 Uncharacterized protein1.7e-6079.08Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE-KNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAP
        MASLLKFKLL THCGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN  RRSPRR +LPE KN DDRK L+R N LKDLFVSSPPY GTD  +++TA+ AP
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE-KNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAP

Query:  IRNVTPVC-KKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
         RNVTPVC K+K + H+GS G  PGSPRPGWTGFRYKYLL+KTWRPVL GIPE
Subjt:  IRNVTPVC-KKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE

A0A6J1FLF8 uncharacterized protein LOC1114453023.0e-81100Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE

A0A6J1HGM7 uncharacterized protein LOC1114633733.3e-5978.15Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLL THCGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN +RRSPRR ALP+K  DD KDL+R N LKDLFVSSPPYD +D  INET  AAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVC+++ D  IG     PGSPRPGWTGFR+KYLL+KTWRP+LA IPE
Subjt:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE

A0A6J1I9M9 uncharacterized protein LOC1114704931.4e-5778.15Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLL THCGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN    S RR ALP+K  DD KDL+R N LKDLFVSSPPYD +D  INET  AAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVC+++ D  IG  G  PGSPRPGWTGFRYKYLL+KTWRP+LAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE

A0A6J1K1U6 uncharacterized protein LOC1114898579.8e-8098.01Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDL+RGNKLKDLFVSSPPYDGTD RINETAIAAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVCKKKA+DHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66890.1 FUNCTIONS IN: molecular_function unknown2.4e-1440.48Show/hide
Query:  SLLKFKLLSTHCG-VAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE--------KNIDDRKDLTRGNKLKDLFVSSPPYD--------
        SL KFKLL+THC  VA+SPT     SP++HLRRRK TLR+LLT     RS  R  LPE        K  D R  +    KL DLFVSSPP++        
Subjt:  SLLKFKLLSTHCG-VAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE--------KNIDDRKDLTRGNKLKDLFVSSPPYD--------

Query:  --GTDARINETAIAAPIRNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
          GT   + E     P+  V+       +      G   GS RP  +      LL+++WRPVL  IPE
Subjt:  --GTDARINETAIAAPIRNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE

AT1G68430.1 unknown protein1.3e-1540.99Show/hide
Query:  MASLLKFKLLSTHCGV-AQSPTL--SPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTD-------AR
        MA+L +FK L T CGV AQSPT   SPRTSPL+ LRR+KTTL+MLL    S  SP R           KD+  G KLKDLFVSS   +           +
Subjt:  MASLLKFKLLSTHCGV-AQSPTL--SPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTD-------AR

Query:  INETAIAAPIRNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE
          E  +AA    +    + +         C+     P W GF  K LLQ+ WRP L  I E
Subjt:  INETAIAAPIRNVTPVCKKKADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE

AT5G16200.1 50S ribosomal protein-related2.3e-0937.06Show/hide
Query:  MASLLKFKLLSTH----CGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNF-SRRSPRRCALPEKNIDDRK--DLTRGN------KLKDLFVS--SPPYD
        ++ L KFKL + H       A SPT+SP  SP+ +LRRRK TLRML  ++  SRR   R  L E    D    +  RGN      KL++L V+  SPPY 
Subjt:  MASLLKFKLLSTH----CGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNF-SRRSPRRCALPEKNIDDRK--DLTRGN------KLKDLFVS--SPPYD

Query:  GTDARINETAIAAPIRNVTPVCKKKADDHIGSAGCKPGSPRPGWTG----FRYKYLLQKTWRPVLAGIPE
        G   R +   I      ++P+      D     G +  + R G +G    FR + +L+K WRPVL  IPE
Subjt:  GTDARINETAIAAPIRNVTPVCKKKADDHIGSAGCKPGSPRPGWTG----FRYKYLLQKTWRPVLAGIPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTTTCGACGCACTGCGGCGTCGCTCAGAGTCCCACTTTAAGCCCTAGAACCAGTCCTCTCCTTCACCTCCGCCGCCGTAAAAC
CACTCTGCGGATGCTTCTCACTCGGAATTTCAGCCGCCGGTCCCCTCGCCGCTGCGCCTTGCCGGAGAAGAACATAGACGACCGTAAGGATTTGACTCGAGGCAACAAGT
TGAAGGACTTGTTCGTTTCGTCGCCGCCATATGATGGAACCGACGCCAGGATTAACGAGACGGCGATCGCGGCTCCTATCCGGAACGTAACTCCGGTTTGTAAGAAGAAA
GCCGACGATCATATTGGATCGGCCGGTTGCAAACCCGGTTCACCTAGACCGGGTTGGACCGGCTTCCGGTACAAATACTTGCTTCAGAAAACTTGGCGGCCGGTTCTCGC
CGGAATCCCCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTTTCGACGCACTGCGGCGTCGCTCAGAGTCCCACTTTAAGCCCTAGAACCAGTCCTCTCCTTCACCTCCGCCGCCGTAAAAC
CACTCTGCGGATGCTTCTCACTCGGAATTTCAGCCGCCGGTCCCCTCGCCGCTGCGCCTTGCCGGAGAAGAACATAGACGACCGTAAGGATTTGACTCGAGGCAACAAGT
TGAAGGACTTGTTCGTTTCGTCGCCGCCATATGATGGAACCGACGCCAGGATTAACGAGACGGCGATCGCGGCTCCTATCCGGAACGTAACTCCGGTTTGTAAGAAGAAA
GCCGACGATCATATTGGATCGGCCGGTTGCAAACCCGGTTCACCTAGACCGGGTTGGACCGGCTTCCGGTACAAATACTTGCTTCAGAAAACTTGGCGGCCGGTTCTCGC
CGGAATCCCCGAGTAA
Protein sequenceShow/hide protein sequence
MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNIDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPIRNVTPVCKKK
ADDHIGSAGCKPGSPRPGWTGFRYKYLLQKTWRPVLAGIPE