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CmoCh15G010030 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G010030
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L2, chloroplastic
Genome locationCmo_Chr15:5434650..5437181
RNA-Seq ExpressionCmoCh15G010030
SyntenyCmoCh15G010030
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR002171 - Ribosomal protein L2
IPR008991 - Translation protein SH3-like domain superfamily
IPR014726 - Ribosomal protein L2, domain 3
IPR022669 - Ribosomal protein L2, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEK71530.1 ribosomal protein L2 [Ochna mossambicensis]1.9e-1275.51Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +      TVGQVGNAGVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
AFU96046.1 Rpl2, partial [Ouratea sp. CCD-2012]1.9e-1275.51Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +      TVGQVGNAGVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
QUQ06971.1 ribosomal protein L2 [Sauvagesia rhodoleuca]1.4e-1277.55Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        EI+ +      TVGQVGNAGVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
QWY89085.1 ribosomal protein L2 [Lophira alata]1.9e-1275.51Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +      TVGQVGNAGVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
YP_009546777.1 ribosomal protein L2 [Anigozanthos flavidus]1.4e-1275.51Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +   R  TVGQVGN GVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
TrEMBL top hitse value%identityAlignment
A0A023T0V5 50S ribosomal protein L2, chloroplastic1.2e-1275.51Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +      TVGQVGNAGVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
A0A075EBV3 50S ribosomal protein L2, chloroplastic1.2e-1275.51Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +      TVGQVGNAGVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
A0A3G2Z7P3 50S ribosomal protein L2, chloroplastic7.0e-1375.51Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +   R  TVGQVGN GVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
G0YD53 Ribosomal protein L29.1e-1375.51Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +      TVGQVGNAGVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
K4KAU9 Rpl2 (Fragment)9.1e-1375.51Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +      TVGQVGNAGVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
SwissProt top hitse value%identityAlignment
A4GYV2 50S ribosomal protein L2, chloroplastic3.2e-1575.51Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +      TVGQVGNAGVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
A6MMG4 50S ribosomal protein L2-A, chloroplastic9.4e-1573.47Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +      TVGQVGN GVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
Q14F95 50S ribosomal protein L2-A, chloroplastic3.2e-1575.51Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +      TVGQVGNAGVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
Q14FB6 50S ribosomal protein L2-B, chloroplastic3.2e-1575.51Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +      TVGQVGNAGVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
Q4VZK5 50S ribosomal protein L2, chloroplastic3.2e-1575.51Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +      TVGQVGNAGVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
Arabidopsis top hitse value%identityAlignment
AT2G44065.1 Ribosomal protein L2 family4.1e-0550Show/hide
Query:  VNAR-KTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNP
        +NA+ + T+G V N     K L +AG   WLG RP VRGV MNP
Subjt:  VNAR-KTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNP
AT2G44065.2 Ribosomal protein L2 family4.1e-0550Show/hide
Query:  VNAR-KTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNP
        +NA+ + T+G V N     K L +AG   WLG RP VRGV MNP
Subjt:  VNAR-KTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNP
ATCG00830.1 ribosomal protein L26.7e-1673.47Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +      TVGQVGN GVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
ATCG01310.1 ribosomal protein L26.7e-1673.47Show/hide
Query:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI
        E++ +      TVGQVGN GVNQKSLGRAGSKCWLGKRP+VRGVVMNP+
Subjt:  EIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGGCTATCATTCTAAAGAGTGGGAAAAGGAAATCAAAACTTTAGTCAACGCAAGAAAGACAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTT
AGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTTTAGTAAGAGGAGTAGTTATGAACCCTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGGCTATCATTCTAAAGAGTGGGAAAAGGAAATCAAAACTTTAGTCAACGCAAGAAAGACAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTT
AGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTTTAGTAAGAGGAGTAGTTATGAACCCTATTTAA
Protein sequenceShow/hide protein sequence
MDGYHSKEWEKEIKTLVNARKTTVGQVGNAGVNQKSLGRAGSKCWLGKRPLVRGVVMNPI