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CmoCh15G010170 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G010170
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDynein light chain
Genome locationCmo_Chr15:5950486..5952634
RNA-Seq ExpressionCmoCh15G010170
SyntenyCmoCh15G010170
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150121.1 dynein light chain 1, cytoplasmic [Cucumis sativus]1.3e-5876.19Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM
        M+GAEMELERR+KFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLDSMPGKLDSKRLALALKK                       
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM

Query:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
                   EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

XP_022939677.1 dynein light chain LC6, flagellar outer arm [Cucurbita moschata]6.6e-6379.76Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM
        MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKK                       
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM

Query:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
                   EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
Subjt:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

XP_022973572.1 dynein light chain LC6, flagellar outer arm [Cucurbita maxima]7.3e-6277.98Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM
        MEGAEMELERR+KFLNGLILKKKAGEHQEHRDRLN+RVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLAL LKK                       
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM

Query:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
                   EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
Subjt:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

XP_023551552.1 dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo]1.9e-6279.17Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM
        MEGAEMELERR+KFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKK                       
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM

Query:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
                   EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
Subjt:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

XP_038906759.1 dynein light chain LC6, flagellar outer arm [Benincasa hispida]5.8e-5976.19Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM
        M+GAEMELERR+KFL+GLILKKKAGE QE RDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKK                       
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM

Query:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
                   EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

TrEMBL top hitse value%identityAlignment
A0A0A0KPF8 Dynein light chain6.2e-5976.19Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM
        M+GAEMELERR+KFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLDSMPGKLDSKRLALALKK                       
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM

Query:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
                   EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

A0A1S3CSY6 Dynein light chain6.2e-5976.19Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM
        M+GAEMELERR+KFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLDSMPGKLDSKRLALALKK                       
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM

Query:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
                   EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

A0A6J1CWZ8 Dynein light chain6.9e-5875Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM
        MEGAEMELERR+KFLNGLI KKKA E QE RDRLN+RVRASDMPFPLQNRAFSCARELLDSMPGKLDSKR ALALKK                       
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM

Query:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
                   EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRG SLKD
Subjt:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

A0A6J1FHG9 Dynein light chain3.2e-6379.76Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM
        MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKK                       
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM

Query:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
                   EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
Subjt:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

A0A6J1I7W2 Dynein light chain3.5e-6277.98Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM
        MEGAEMELERR+KFLNGLILKKKAGEHQEHRDRLN+RVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLAL LKK                       
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM

Query:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
                   EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD
Subjt:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

SwissProt top hitse value%identityAlignment
P61285 Dynein light chain 1, cytoplasmic3.3e-0961.36Show/hide
Query:  EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT
        EFD  Y P WHCIVG +FGSYVTH    F+YF + +V ILLFK+
Subjt:  EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT

P63167 Dynein light chain 1, cytoplasmic3.3e-0961.36Show/hide
Query:  EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT
        EFD  Y P WHCIVG +FGSYVTH    F+YF + +V ILLFK+
Subjt:  EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT

Q22799 Dynein light chain 1, cytoplasmic3.3e-0961.36Show/hide
Query:  EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT
        EFD  Y P WHCIVG +FGSYVTH    F+YF + +V ILLFK+
Subjt:  EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT

Q24117 Dynein light chain 1, cytoplasmic3.3e-0961.36Show/hide
Query:  EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT
        EFD  Y P WHCIVG +FGSYVTH    F+YF + +V ILLFK+
Subjt:  EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT

Q86A88 Dynein light chain, cytoplasmic2.0e-0962.79Show/hide
Query:  EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
        EFD  Y P WHCIVG SFGS+VTH    F+YF+I+K  +LLFK
Subjt:  EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein7.0e-4760.49Show/hide
Query:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM
        MEG E+ELERR+KFLN LI KKKA E Q+ +D  NVRVRASDMP P QNRAFS +RE+L++ PGK D+KRLA ALKK                       
Subjt:  MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEM

Query:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSR
                   +FDS+YGPAWHCIVGTSFGSYVTHS GGFLYF IDKVY+LLFKTAVEPL +
Subjt:  RFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSR

AT1G52240.2 RHO guanyl-nucleotide exchange factor 115.8e-0931.15Show/hide
Query:  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEMRFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSL
        V  SDMP  +Q +A + A + LD +    D K +A  +KK                                  EFD  YG  W C+VG++FG + THS 
Subjt:  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEMRFPDCHFGLGGEFDSSYGPAWHCIVGTSFGSYVTHSL

Query:  GGFLYFSIDKVYILLFKTAVEP
        G F+YF ++ +  L+FK A  P
Subjt:  GGFLYFSIDKVYILLFKTAVEP

AT4G15930.1 Dynein light chain type 1 family protein1.2e-0956.82Show/hide
Query:  EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT
        EFD  +G  WHCIVG +FGSYVTH    F+YF +D+  +LLFK+
Subjt:  EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKT

AT4G27360.1 Dynein light chain type 1 family protein4.0e-1060.87Show/hide
Query:  EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV
        EFD SYG  W CIVGT FGS+VTH  G F++FS+  + ILLFK +V
Subjt:  EFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAV

AT5G20110.1 Dynein light chain type 1 family protein9.3e-2346.15Show/hide
Query:  DRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEMRFPDCHFGLGGEFDSSYGPAWHCIVGTSFGS
        + L VR+ A+DMP  +Q  AF CAR  LDS+  K  SK +A  LKK                                  EFD  YGPAWHCIVG+SFGS
Subjt:  DRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEMRFPDCHFGLGGEFDSSYGPAWHCIVGTSFGS

Query:  YVTHSLGGFLYFSIDKVYILLFKTAVEPLS
        +VTHS G F+YFS+DK+Y+LLFKT V P S
Subjt:  YVTHSLGGFLYFSIDKVYILLFKTAVEPLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGAGCGGAAATGGAGCTTGAGCGACGCACCAAGTTTCTAAATGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCATCAAGAGCACCGCGATCGTCTCAATGTTCG
CGTTAGAGCCTCCGATATGCCGTTTCCTCTCCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTTCTTGATTCCATGCCTGGGAAGCTCGATAGCAAACGCCTCGCTCTTG
CCCTCAAAAAGGTAAGGCAAAAAAGATTTAAAAAAAAAAAAAGAAATTATACCCTTGAACTCACTTTTGGTTCTGAAATGCGTTTTCCTGACTGCCATTTTGGGTTAGGC
GGAGAATTTGATTCGTCCTATGGTCCAGCATGGCATTGCATCGTGGGAACTAGCTTTGGGTCGTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATCGACAA
AGTTTACATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTGTCTCGTGGGAAGTCGTTGAAAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGAGCGGAAATGGAGCTTGAGCGACGCACCAAGTTTCTAAATGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCATCAAGAGCACCGCGATCGTCTCAATGTTCG
CGTTAGAGCCTCCGATATGCCGTTTCCTCTCCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTTCTTGATTCCATGCCTGGGAAGCTCGATAGCAAACGCCTCGCTCTTG
CCCTCAAAAAGGTAAGGCAAAAAAGATTTAAAAAAAAAAAAAGAAATTATACCCTTGAACTCACTTTTGGTTCTGAAATGCGTTTTCCTGACTGCCATTTTGGGTTAGGC
GGAGAATTTGATTCGTCCTATGGTCCAGCATGGCATTGCATCGTGGGAACTAGCTTTGGGTCGTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATCGACAA
AGTTTACATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTGTCTCGTGGGAAGTCGTTGAAAGATTGAGTTTCTGAATTCTGAACGAGGATCGAACAGCAAGAACAACCAG
CTTCAATCTCATTATTCTTTTTGGGTTGTATCATTGGGTTTACCTTGTTTAAGAAACAGATTGTGCAGGTTCTTGTTTGATGTGAGTTGTGCATCAATTTTACTCGTTGG
TTATGAAATTTTGTTGTGTGCAGGATTTGTGATGTTACCATGTTAACCTTCAAATGAAAATTAAGACATGAACGCTAATATTTTTA
Protein sequenceShow/hide protein sequence
MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKVRQKRFKKKKRNYTLELTFGSEMRFPDCHFGLG
GEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD