CuGenDBv2

Gene ID	CmoCh15G010380
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	ATP-dependent Clp protease proteolytic subunit
Genome location	Cmo_Chr15:6527441..6527876
RNA-Seq Expression	CmoCh15G010380
Synteny	CmoCh15G010380
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0004176 - ATP-dependent peptidase activity (molecular function) GO:0004252 - serine-type endopeptidase activity (molecular function)
InterPro domains	IPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA IPR029045 - ClpP/crotonase-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AYP35247.1 clp protease proteolytic subunit [Thaumatococcus daniellii]

1.2e-13

78.85

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTANQK
        + LRET+TKVYVQRTGKPLWVVSEDMERD FMS  EAQAHGIVD V   N+K
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTANQK

BCT22023.1 ATP-dependent Clp protease proteolytic subunit [Musella lasiocarpa]

1.2e-13

80.39

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTANQ
        + LRETITKVYVQRTGKPLWVVSEDMERD FMS  EAQAHGIVD+V   N+
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTANQ

YP_009447475.1 ATP-dependent Clp protease proteolytic subunit [Cucurbita maxima]

4.7e-15

95.65

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV
        +TLRETITKVYVQRTGKPLWVVSEDMERDAFMS KEAQAHGIVDVV
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV

YP_009447560.1 ATP-dependent Clp protease proteolytic subunit [Cucurbita moschata]

4.7e-15

95.65

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV
        +TLRETITKVYVQRTGKPLWVVSEDMERDAFMS KEAQAHGIVDVV
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV

YP_009505105.1 ATP-dependent Clp protease proteolytic subunit [Cucurbita pepo]

4.7e-15

95.65

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV
        +TLRETITKVYVQRTGKPLWVVSEDMERDAFMS KEAQAHGIVDVV
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV

TrEMBL top hits

e value

%identity

Alignment

A0A2H4T1Y8 ATP-dependent Clp protease proteolytic subunit

2.3e-15

95.65

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV
        +TLRETITKVYVQRTGKPLWVVSEDMERDAFMS KEAQAHGIVDVV
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV

A0A2H4T274 ATP-dependent Clp protease proteolytic subunit

2.3e-15

95.65

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV
        +TLRETITKVYVQRTGKPLWVVSEDMERDAFMS KEAQAHGIVDVV
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV

A0A344AXP4 ATP-dependent Clp protease proteolytic subunit

2.3e-15

95.65

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV
        +TLRETITKVYVQRTGKPLWVVSEDMERDAFMS KEAQAHGIVDVV
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV

A0A3G2Z4I5 ATP-dependent Clp protease proteolytic subunit

5.6e-14

80.39

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTANQ
        + LRETITKVYVQRTGKPLWVVSEDMERD FMS  EAQAHGIVD+V   N+
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTANQ

A0A3G2Z6Z4 ATP-dependent Clp protease proteolytic subunit

5.6e-14

78.85

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTANQK
        + LRET+TKVYVQRTGKPLWVVSEDMERD FMS  EAQAHGIVD V   N+K
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTANQK

SwissProt top hits

e value

%identity

Alignment

A6MMN2 ATP-dependent Clp protease proteolytic subunit

9.9e-16

76.47

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTANQ
        + LRET+TKVYVQRTG PLW VSEDMERDAFMS  EAQAHGIVD+V   N+
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTANQ

Q06GX2 ATP-dependent Clp protease proteolytic subunit

2.2e-15

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTAN
        + LRET+T+VYVQRTG PLWV+SEDMERD FMS  EAQAHGIVDVV   N
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTAN

Q2QD64 ATP-dependent Clp protease proteolytic subunit

2.2e-15

82.61

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV
        + LRETITKVYVQRTGKPLWV+SED+ERD FMS  EAQAHGIVD+V
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV

Q3BAL3 ATP-dependent Clp protease proteolytic subunit

1.7e-15

74.51

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTANQ
        + LRET+TKVYVQRTG PLWV+SEDMERD FMS  EAQAHGIVD+V   N+
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTANQ

Q49KX3 ATP-dependent Clp protease proteolytic subunit

2.2e-15

84.78

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV
        + LRETIT+VYVQRTGKPLWVVSEDMERD FMS  EAQAHGIVD+V
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV

Arabidopsis top hits

e value

%identity

Alignment

AT5G23140.1 nuclear-encoded CLP protease P7

5.6e-06

46.51

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Query:  ETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVV
        + + ++YV+ TG+PL VV+ +M+RD FM+ +EA+A GI+D V+
Subjt:  ETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVV

ATCG00670.1 plastid-encoded CLP P

3.5e-16

80.43

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Query:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV
        + LRETIT+VYVQRTGKP+WV+SEDMERD FMS  EAQAHGIVD+V
Subjt:  MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVV

Sequences

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CDS sequence

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ATGACGTTGCGCGAAACCATCACAAAGGTTTATGTACAAAGAACAGGCAAACCCTTATGGGTTGTATCCGAAGATATGGAAAGGGATGCTTTTATGTCAGTAAAAGAAGC
CCAAGCTCATGGAATTGTTGATGTTGTAGTGACAGCCAATCAAAAATATCACCAAATCGCTCGCCCTTCGCGGATGCCCTCAGCGTTGAGGAACATGTACTAG

mRNA sequence

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Protein sequence

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MTLRETITKVYVQRTGKPLWVVSEDMERDAFMSVKEAQAHGIVDVVVTANQKYHQIARPSRMPSALRNMY

CmoCh15G010380 (gene) of Cucurbita moschata (Rifu) v1 genome