CuGenDBv2

Gene ID	CmoCh15G011310
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Pectin lyase-like superfamily protein
Genome location	Cmo_Chr15:7854149..7854658
RNA-Seq Expression	CmoCh15G011310
Synteny	CmoCh15G011310
Gene Ontology terms	GO:0005975 - carbohydrate metabolic process (biological process) GO:0004650 - polygalacturonase activity (molecular function)
InterPro domains	IPR011050 - Pectin lyase fold/virulence factor IPR012334 - Pectin lyase fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022922172.1 probable polygalacturonase [Cucurbita moschata]

1.5e-54

96.4

Show/hide

Query:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG
        LLTEFGGVGDGVTSNTHAFR+AIEHLSTLA DGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWP VEVLPSYGRGRDAPGGRYSSLIFG
Subjt:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG

Query:  TNLTDVVITGD
        TNLTDVVITG+
Subjt:  TNLTDVVITGD

XP_022922359.1 probable polygalacturonase [Cucurbita moschata]

2.1e-56

99.1

Show/hide

Query:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG
        LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG
Subjt:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG

Query:  TNLTDVVITGD
        TNLTDVVITG+
Subjt:  TNLTDVVITGD

XP_023520463.1 probable polygalacturonase [Cucurbita pepo subsp. pepo]

1.9e-54

94.59

Show/hide

Query:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG
        LLTEFGGVGDGVTSNTHAFR+AIEHLSTLAADGGAQL+VPPGKWLTGSFNLTSHFTLFIDKEAK+LASQNESEWP +EVLPSYGRGRDAPGGRYSSLIFG
Subjt:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG

Query:  TNLTDVVITGD
        TNLTDVVITG+
Subjt:  TNLTDVVITGD

XP_023521226.1 probable polygalacturonase [Cucurbita pepo subsp. pepo]

3.3e-54

94.59

Show/hide

Query:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG
        LLTEFGGVGDGVTSNTHAFR+AIEHLST+AADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAK+LASQNESEWP V+VLPSYGRGRDAPGGRYSSLIFG
Subjt:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG

Query:  TNLTDVVITGD
        TNLTDVVITG+
Subjt:  TNLTDVVITGD

XP_023550547.1 probable polygalacturonase [Cucurbita pepo subsp. pepo]

1.3e-55

98.2

Show/hide

Query:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG
        LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNES WPRVEVLPSYGRGRDAPGGRYSSLIFG
Subjt:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG

Query:  TNLTDVVITGD
        TNLTDVVITG+
Subjt:  TNLTDVVITGD

TrEMBL top hits

e value

%identity

Alignment

A0A6J1E2G9 probable polygalacturonase

7.2e-55

96.4

Show/hide

Query:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG
        LLTEFGGVGDGVTSNTHAFR+AIEHLSTLA DGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWP VEVLPSYGRGRDAPGGRYSSLIFG
Subjt:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG

Query:  TNLTDVVITGD
        TNLTDVVITG+
Subjt:  TNLTDVVITGD

A0A6J1E308 probable polygalacturonase

2.1e-54

95.5

Show/hide

Query:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG
        LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEA +LASQNESEWP V VLPSYGRGRDAPGGRYSSLIFG
Subjt:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG

Query:  TNLTDVVITGD
        TNLTDVVITG+
Subjt:  TNLTDVVITGD

A0A6J1E359 probable polygalacturonase

1.0e-56

99.1

Show/hide

Query:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG
        LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG
Subjt:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG

Query:  TNLTDVVITGD
        TNLTDVVITG+
Subjt:  TNLTDVVITGD

A0A6J1E3E2 probable polygalacturonase

2.3e-53

92.79

Show/hide

Query:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG
        LLTEFGGVGDGVTSNTHAFR+AIEHLSTLAADGGA+L+VPPGKWLTGSFNLTSHFTLFIDKEAK+LASQ ESEWP VEVLPSYGRGRDAP GRYSSLIFG
Subjt:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG

Query:  TNLTDVVITGD
        TNLTDVVITG+
Subjt:  TNLTDVVITGD

A0A6J1IBV8 probable polygalacturonase

7.9e-54

94.59

Show/hide

Query:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG
        LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEA + ASQNESEWP V VLPSYGRGRDAPGGRYSSLIFG
Subjt:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG

Query:  TNLTDVVITGD
        TNLTDVVITG+
Subjt:  TNLTDVVITGD

SwissProt top hits

e value

%identity

Alignment

A7PZL3 Probable polygalacturonase

6.3e-40

69.09

Show/hide

Query:  LTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFGT
        L +FGGVGDG T NT AF+ A+  LS   ++GGAQL VP GKWLTGSF+LTSHFTLF+ ++A LLASQ+ S+WP ++ LPSYGRGRDA  GRY+SLIFGT
Subjt:  LTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFGT

Query:  NLTDVVITGD
        NLTDV+ITGD
Subjt:  NLTDVVITGD

P15922 Exo-poly-alpha-D-galacturonosidase

2.7e-06

36.59

Show/hide

Query:  LTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSY
        +T++G  GDG T NT A ++AI+     A   G ++ VP G + TG+  L S  TL + + A LL S N +++P    + SY
Subjt:  LTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSY

Arabidopsis top hits

e value

%identity

Alignment

AT2G23900.1 Pectin lyase-like superfamily protein

9.0e-42

72.97

Show/hide

Query:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG
        +LTEFG VGDG TSNT AF++AI  L+  AADGG QL+VPPGKWLTGSFNLTSHFTLFI K A +LASQ+ESE+P V  LPSYG+GRDA G  ++SLI G
Subjt:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFG

Query:  TNLTDVVITGD
        TNLTDVVITG+
Subjt:  TNLTDVVITGD

AT3G48950.1 Pectin lyase-like superfamily protein

3.7e-43

74.11

Show/hide

Query:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPG-GRYSSLIF
        +LT+FG VGDG TSNT AFR AI  LS +A DGGAQLVVPPGKWLTGSFNLTSHFTLFI + A +LASQ+ESEWP +  LPSYG+GRD  G GR++SLI 
Subjt:  LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPG-GRYSSLIF

Query:  GTNLTDVVITGD
        GTNLTDVVITG+
Subjt:  GTNLTDVVITGD

AT3G61490.1 Pectin lyase-like superfamily protein

2.6e-41

68.18

Show/hide

Query:  LTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFGT
        +TE+GGVGDG T NT AF+ A++HLS  +++GGAQL VP GKWLTGSFNLTSHFTLF+ K+A LLA+Q+ +E+P ++ LPSYGRGRDA GGR++SLIFGT
Subjt:  LTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFGT

Query:  NLTDVVITGD
        NL+DV+ITG+
Subjt:  NLTDVVITGD

AT3G61490.2 Pectin lyase-like superfamily protein

2.6e-41

68.18

Show/hide

Query:  LTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFGT
        +TE+GGVGDG T NT AF+ A++HLS  +++GGAQL VP GKWLTGSFNLTSHFTLF+ K+A LLA+Q+ +E+P ++ LPSYGRGRDA GGR++SLIFGT
Subjt:  LTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFGT

Query:  NLTDVVITGD
        NL+DV+ITG+
Subjt:  NLTDVVITGD

AT3G61490.3 Pectin lyase-like superfamily protein

2.6e-41

68.18

Show/hide

Query:  LTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFGT
        +TE+GGVGDG T NT AF+ A++HLS  +++GGAQL VP GKWLTGSFNLTSHFTLF+ K+A LLA+Q+ +E+P ++ LPSYGRGRDA GGR++SLIFGT
Subjt:  LTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFGT

Query:  NLTDVVITGD
        NL+DV+ITG+
Subjt:  NLTDVVITGD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TTGCTGACGGAGTTTGGCGGCGTTGGGGACGGAGTAACTTCAAACACTCACGCGTTCCGGCAAGCAATTGAACATCTCAGCACATTGGCAGCGGATGGCGGTGCT
CAATTGGTCGTGCCGCCAGGAAAATGGCTGACTGGAAGTTTTAATCTGACCAGCCATTTCACACTTTTTATCGATAAAGAAGCTAAACTTCTTGCATCCCAGAAT
GAATCGGAATGGCCACGGGTAGAAGTTCTCCCATCTTATGGGAGGGGAAGAGATGCTCCCGGTGGACGGTACAGTAGCCTCATCTTTGGAACTAATCTCACGGAT
GTAGTTATCACGGGTGATTATTTCTTTTTCTTACGTTTTAACATTGTAATTTTTTTAAAAAAAATTATAATCTTATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

LLTEFGGVGDGVTSNTHAFRQAIEHLSTLAADGGAQLVVPPGKWLTGSFNLTSHFTLFIDKEAKLLASQNESEWPRVEVLPSYGRGRDAPGGRYSSLIFGTNLTD
VVITGDYFFFLRFNIVIFLKKIIIL

CmoCh15G011310 (gene) of Cucurbita moschata (Rifu) v1 genome