CuGenDBv2

Gene ID	CmoCh15G011670
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Genome location	Cmo_Chr15:8134684..8139899
RNA-Seq Expression	CmoCh15G011670
Synteny	CmoCh15G011670
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0005506 - iron ion binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016628 - oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor (molecular function) GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN68148.1 hypothetical protein VITISV_035665 [Vitis vinifera]

6.8e-75

72.22

Show/hide

Query:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY
        +HAL  KKKIGF+DGT+EEPSQ+     FE WN+CNSMI+SWLTH+VE DIAEGIIHAKTA +VWVDL DQFSQKNA A+FQIQKSIA MSQGTMT++AY
Subjt:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY

Query:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA
        FTK+KALWDELE YR+P TCNQ Q H++QREED+LMQ L+GLNESYK VR NILMM+PLPNVRQAYSL+VQEEMQRQ         SS P+  F   A
Subjt:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA

RVW69506.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

8.9e-75

72.22

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Query:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY
        +HAL  KKKIGF+DGT+EEPSQ+     FE WN+CNSMI+SWLTH+VE DIAEGIIHAKTA +VWVDL DQFSQKNA A+FQIQKSIA MSQGTMT++AY
Subjt:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY

Query:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA
        FTK+KALWDELE YR+P TCNQ Q H++QREED+LMQ L+GLNESYK VR NILMM+PLPNVRQAYSL+VQEEMQRQ         SS P+  F   A
Subjt:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA

RVW74688.1 2-alkenal reductase (NADP(+)-dependent) [Vitis vinifera]

8.9e-75

72.22

Show/hide

Query:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY
        +HAL  KKKIGF+DGT+EEPSQ+     FE WN+CNSMI+SWLTH+VE DIAEGIIHAKTA +VWVDL DQFSQKNA A+FQIQKSIA MSQGTMT++AY
Subjt:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY

Query:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA
        FTK+KALWDELE YR+P TCNQ Q H++QREED+LMQ L+GLNESYK VR NILMM+PLPNVRQAYSL+VQEEMQRQ         SS P+  F   A
Subjt:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA

RVX09068.1 Geraniol 8-hydroxylase [Vitis vinifera]

8.9e-75

72.22

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Query:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY
        +HAL  KKKIGF+DGT+EEPSQ+     FE WN+CNSMI+SWLTH+VE DIAEGIIHAKTA +VWVDL DQFSQKNA A+FQIQKSIA MSQGTMT++AY
Subjt:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY

Query:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA
        FTK+KALWDELE YR+P TCNQ Q H++QREED+LMQ L+GLNESYK VR NILMM+PLPNVRQAYSL+VQEEMQRQ         SS P+  F   A
Subjt:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA

XP_010646703.1 PREDICTED: uncharacterized protein LOC104878279 [Vitis vinifera]

2.0e-74

70.85

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Query:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY
        +HAL  KKKIGF++GT+EEPSQ+     FE WN+CNSMI+SWLTH+VE DIAEGIIHAKTA +VWVDL DQFSQKNA A+FQIQKSIA MSQGTMT++AY
Subjt:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY

Query:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLAD
        FTK+KALWDELE YR+P TCNQ Q H++QREED+LMQ L+GLNESYK VR NILMM+PLPNVRQAYSL++QEEMQRQ         SS P+  F   A+
Subjt:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLAD

TrEMBL top hits

e value

%identity

Alignment

A0A438GBE7 Retrovirus-related Pol polyprotein from transposon RE1

4.3e-75

72.22

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Query:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY
        +HAL  KKKIGF+DGT+EEPSQ+     FE WN+CNSMI+SWLTH+VE DIAEGIIHAKTA +VWVDL DQFSQKNA A+FQIQKSIA MSQGTMT++AY
Subjt:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY

Query:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA
        FTK+KALWDELE YR+P TCNQ Q H++QREED+LMQ L+GLNESYK VR NILMM+PLPNVRQAYSL+VQEEMQRQ         SS P+  F   A
Subjt:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA

A0A438GFQ0 Retrovirus-related Pol polyprotein from transposon RE1

2.1e-74

71.21

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Query:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY
        +HAL  KKKIGF++GT+EEPSQ+     FE WN+CNSMI+SWLTH+VE DIAEGIIHAKTA +VWVDL DQFSQKNA A+FQIQKSIA MSQGTMT++AY
Subjt:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY

Query:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA
        FTK+KALWDELE YR+P TCNQ Q H++QREED+LMQ L+GLNESYK VR NILMM+PLPNVRQAYSL++QEEMQRQ         SS P+  F   A
Subjt:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA

A0A438GR91 2-alkenal reductase (NADP(+)-dependent)

4.3e-75

72.22

Show/hide

Query:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY
        +HAL  KKKIGF+DGT+EEPSQ+     FE WN+CNSMI+SWLTH+VE DIAEGIIHAKTA +VWVDL DQFSQKNA A+FQIQKSIA MSQGTMT++AY
Subjt:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY

Query:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA
        FTK+KALWDELE YR+P TCNQ Q H++QREED+LMQ L+GLNESYK VR NILMM+PLPNVRQAYSL+VQEEMQRQ         SS P+  F   A
Subjt:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA

A0A438JJE0 Geraniol 8-hydroxylase

4.3e-75

72.22

Show/hide

Query:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY
        +HAL  KKKIGF+DGT+EEPSQ+     FE WN+CNSMI+SWLTH+VE DIAEGIIHAKTA +VWVDL DQFSQKNA A+FQIQKSIA MSQGTMT++AY
Subjt:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY

Query:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA
        FTK+KALWDELE YR+P TCNQ Q H++QREED+LMQ L+GLNESYK VR NILMM+PLPNVRQAYSL+VQEEMQRQ         SS P+  F   A
Subjt:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA

A5BNR5 Integrase catalytic domain-containing protein

3.3e-75

72.22

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Query:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY
        +HAL  KKKIGF+DGT+EEPSQ+     FE WN+CNSMI+SWLTH+VE DIAEGIIHAKTA +VWVDL DQFSQKNA A+FQIQKSIA MSQGTMT++AY
Subjt:  MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAY

Query:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA
        FTK+KALWDELE YR+P TCNQ Q H++QREED+LMQ L+GLNESYK VR NILMM+PLPNVRQAYSL+VQEEMQRQ         SS P+  F   A
Subjt:  FTKLKALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

2.1e-21

30.86

Show/hide

Query:  KKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAYFTKLKAL
        KK GFIDGT+ +P  D  S  ++ W +CN+M++ WL +S+   + E +++A+TAH++W DL   F     L I+Q+++ +A + QG  ++  YF KL  +
Subjt:  KKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAYFTKLKAL

Query:  WDELEAYRT-------PFTCNQHQIHVDQREEDKLMQLLIG--LNESYKTVRYNILMMTPLPNVRQAYSLLVQEE
        W EL  Y            C   +   + RE+++  + L+G  LN+ ++ V   I+   P P++ +A++++   E
Subjt:  WDELEAYRT-------PFTCNQHQIHVDQREEDKLMQLLIG--LNESYKTVRYNILMMTPLPNVRQAYSLLVQEE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCATGCTCTTGTTGACAAAAAGAAAATTGGCTTCATTGATGGCACAATTGAAGAACCGTCTCAAGATGCAAATTCAACCGAATTTGAACTCTGGAATAAGTGC
AACAGTATGATAATATCTTGGTTAACTCATTCAGTTGAAGGAGATATTGCTGAGGGTATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGAT
CAATTCTCACAAAAGAATGCTCTAGCAATTTTTCAGATACAAAAGTCAATAGCAATGATGTCACAAGGAACCATGACACTGTCAGCATATTTCACCAAGCTCAAA
GCACTCTGGGATGAATTGGAAGCGTACCGCACACCATTTACCTGTAATCAACATCAAATACATGTTGATCAACGCGAAGAAGACAAGTTGATGCAACTACTCATT
GGGCTCAATGAGTCTTATAAAACGGTGAGATATAACATATTGATGATGACTCCATTACCTAATGTGAGGCAAGCCTATTCATTACTTGTACAAGAAGAGATGCAG
CGTCAGGACTTGGCTACGGGGAAAATGATTGGATCGAGTCATCCTTCTTCTCGTTTTAAATTTCTAGCTGATCAATTGCATCTTAATAATGCTACTCTTTCTCAT
AACGTTCTTCCTCATTCATTCTGGAATCTGGAACGATTGATTTCATTCGATTCTCTTGCTATCAACAATTTATCGTTCCCCCGAAAGTTCTTCAGCATCCTTTCG
GCTCAATTTTTCTCTGTTTTGTGCATTCTTAATCCAGGTGCTGAAGCTTGA

mRNA sequence

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Protein sequence

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MHALVDKKKIGFIDGTIEEPSQDANSTEFELWNKCNSMIISWLTHSVEGDIAEGIIHAKTAHQVWVDLHDQFSQKNALAIFQIQKSIAMMSQGTMTLSAYFTKLK
ALWDELEAYRTPFTCNQHQIHVDQREEDKLMQLLIGLNESYKTVRYNILMMTPLPNVRQAYSLLVQEEMQRQDLATGKMIGSSHPSSRFKFLADQLHLNNATLSH
NVLPHSFWNLERLISFDSLAINNLSFPRKFFSILSAQFFSVLCILNPGAEA

CmoCh15G011670 (gene) of Cucurbita moschata (Rifu) v1 genome