CuGenDBv2

Gene ID	CmoCh15G012020
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Genome location	Cmo_Chr15:8332412..8332730
RNA-Seq Expression	CmoCh15G012020
Synteny	CmoCh15G012020
Gene Ontology terms	GO:0042773 - ATP synthesis coupled electron transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0048038 - quinone binding (molecular function)
InterPro domains	IPR001750 - NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit IPR003918 - NADH:ubiquinone oxidoreductase

Homology

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GenBank top hits

e value

%identity

Alignment

ALO21948.1 NdhD [Cucurbita cordata]

7.4e-49

96.12

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Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLP+AHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        LII
Subjt:  LII

ALO22781.1 NdhD [Cucurbita pepo subsp. pepo]

7.4e-49

96.12

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Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLP+AHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        LII
Subjt:  LII

YP_009295472.1 NADH-plastoquinone oxidoreductase subunit 4 [Malus prunifolia]

2.6e-49

96.12

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Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        MGVLGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLPNAHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        LII
Subjt:  LII

YP_009444082.1 NADH-plastoquinone oxidoreductase subunit 4 [Malus micromalus]

2.6e-49

96.12

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Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        MGVLGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLPNAHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        LII
Subjt:  LII

YP_009723198.1 NADH-plastoquinone oxidoreductase subunit 4 [Malus angustifolia]

2.6e-49

96.12

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Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        MGVLGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLPNAHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        LII
Subjt:  LII

TrEMBL top hits

e value

%identity

Alignment

A0A1C8YB70 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

1.2e-49

96.12

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Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        MGVLGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLPNAHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        LII
Subjt:  LII

A0A1S6KLG6 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

1.2e-49

96.12

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Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        MGVLGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLPNAHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        LII
Subjt:  LII

A0A4Y5V0H4 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

1.2e-49

96.12

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Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        MGVLGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLPNAHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        LII
Subjt:  LII

A0A650B0R5 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

1.2e-49

96.12

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Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        MGVLGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLPNAHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        LII
Subjt:  LII

A0A7D5XZ18 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

1.2e-49

96.12

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Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        MGVLGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLPNAHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        LII
Subjt:  LII

SwissProt top hits

e value

%identity

Alignment

A0ZZ85 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

3.1e-50

92.23

Show/hide

Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        +GVLG+GLYGSNEPTLNFET ANQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLP+AHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        LII
Subjt:  LII

Q0ZIW8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

6.3e-51

92.23

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Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        +GVLGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLP+AHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        L++
Subjt:  LII

Q2L955 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

3.1e-50

92.23

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Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        +GVLG+GLYGSNEPTLNFET ANQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLP+AHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        LII
Subjt:  LII

Q4VZL8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

1.7e-51

95.15

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Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        MGVLGIGLYGSNEPTLNFETSANQSYPIALEI+FYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLP+AHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        LII
Subjt:  LII

Q68RV6 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

1.1e-50

91.26

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Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        MGVLG+GLYGSNEPTLNFETS NQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGL+RINMELLP+AHSIFSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        L+I
Subjt:  LII

Arabidopsis top hits

e value

%identity

Alignment

ATCG01050.1 NADH-Ubiquinone/plastoquinone (complex I) protein

1.1e-47

84.47

Show/hide

Query:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW
        +GVLGI LYGSNEPTLN E  AN+SYP+ LEI+FYIGF IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL  ILLKMGAYGLVRINMELLP+AHS+FSPW
Subjt:  MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPW

Query:  LII
        L++
Subjt:  LII

ATMG00580.1 NADH dehydrogenase subunit 4

4.7e-09

31.03

Show/hide

Query:  TLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPWL
        T + + S    +    +I  +I    +FAVK P++P+H WLP+ H EA  +  ++L  I LK G +G +R ++ + P A    +P++
Subjt:  TLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPWL

Sequences

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CDS sequence

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ATGGGAGTCCTGGGTATCGGTTTATATGGTTCTAATGAACCAACTTTAAATTTTGAAACATCGGCTAATCAATCGTATCCTATAGCACTAGAAATAATATTCTATATCGG
ATTTCCTATTGCTTTTGCTGTCAAATCACCGATTATACCCTTACATACATGGTTACCAGATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTAACCGAAATCT
TATTAAAAATGGGAGCATATGGATTAGTTCGGATCAATATGGAATTATTACCCAACGCCCATTCTATTTTTTCACCCTGGTTGATCATAGCATAA

mRNA sequence

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Protein sequence

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MGVLGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFPIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLTEILLKMGAYGLVRINMELLPNAHSIFSPWLIIA

CmoCh15G012020 (gene) of Cucurbita moschata (Rifu) v1 genome