CuGenDBv2

Gene ID	CmoCh15G012440
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	transcription factor bHLH118-like
Genome location	Cmo_Chr15:8548894..8549354
RNA-Seq Expression	CmoCh15G012440
Synteny	CmoCh15G012440
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0090575 - RNA polymerase II transcription factor complex (cellular component) GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function) GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domains	IPR015660 - Achaete-scute transcription factor-related

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579461.1 Transcription factor basic helix-loop-helix 120, partial [Cucurbita argyrosperma subsp. sororia]

9.8e-34

95.29

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Query:  MQAKIQMLTNKRDELKSLFKDDSDTHTVETLQSSKKDFVVVKPRLEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKIN
        MQAKIQMLTNKRDELKSLFKDDS+T TVETLQSSKKDFVVVKPRL GFQVVVDTATQHSFPLSMILKSLLTQNL+IISCITTKIN
Subjt:  MQAKIQMLTNKRDELKSLFKDDSDTHTVETLQSSKKDFVVVKPRLEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKIN

KAG7016932.1 Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.9e-27

93.15

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Query:  DELKSLFKDDSDTHTVETLQSSKKDFVVVKPRLEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKIN
        DELKSLFKDDS+T TVETLQSSKKDFV VKPRL GFQVVVDTATQHSFPLSMILKSLLTQNL+IISCITTKIN
Subjt:  DELKSLFKDDSDTHTVETLQSSKKDFVVVKPRLEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKIN

KGN50164.1 hypothetical protein Csa_000575 [Cucumis sativus]

3.0e-14

56.18

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Query:  MQAKIQMLTNKRDELKSLFKDDSDTH---TVETLQSSKKDFVVVKPR-LEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKIN
        MQ KIQML NKRDELK   +D  D+    T+ETL SSK+D V+V PR   G Q+++DTAT H  PLS ++K L+TQNL+IISC +T+ N
Subjt:  MQAKIQMLTNKRDELKSLFKDDSDTH---TVETLQSSKKDFVVVKPR-LEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKIN

XP_022156904.1 transcription factor bHLH118-like [Momordica charantia]

4.1e-16

57.65

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Query:  MQAKIQMLTNKRDELKSLFKDDSDTHTVETLQSSKKDFVVVKPRLEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKIN
        MQ ++Q L++KR+ELK L  +DSD  T ETL +SK+D V V+PR EG QVV+DT TQH  P+S IL++LL   LEI+ CI+TKIN
Subjt:  MQAKIQMLTNKRDELKSLFKDDSDTHTVETLQSSKKDFVVVKPRLEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKIN

XP_038876288.1 transcription factor bHLH120-like [Benincasa hispida]

4.4e-18

62.79

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Query:  MQAKIQMLTNKRDELKSLFKDDSDTHTVETLQSSKKDFVVVKPRLEGFQVVVDTATQHSFPLSMILKSLLT-QNLEIISCITTKIN
        MQ+KIQ LT KRDELK   +DDS+  T+ETL SSK+D VVVKPR  GFQ+++DTATQH  PLS ++K L+T Q L+I+SC +TKIN
Subjt:  MQAKIQMLTNKRDELKSLFKDDSDTHTVETLQSSKKDFVVVKPRLEGFQVVVDTATQHSFPLSMILKSLLT-QNLEIISCITTKIN

TrEMBL top hits

e value

%identity

Alignment

A0A097IYP0 BHLH transcription factor

2.4e-14

56.18

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Query:  MQAKIQMLTNKRDELKSLFKDDSDT---HTVETLQSSKKDFVVVKPR-LEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKIN
        MQ KIQML NKRDELK   +D  D+    T+ETL SSK+D V+V PR   G Q+++DTAT H  PLS ++K L+TQNL+IISC +T+ N
Subjt:  MQAKIQMLTNKRDELKSLFKDDSDT---HTVETLQSSKKDFVVVKPR-LEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKIN

A0A0A0KMQ4 BHLH domain-containing protein

1.4e-14

56.18

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Query:  MQAKIQMLTNKRDELKSLFKDDSDTH---TVETLQSSKKDFVVVKPR-LEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKIN
        MQ KIQML NKRDELK   +D  D+    T+ETL SSK+D V+V PR   G Q+++DTAT H  PLS ++K L+TQNL+IISC +T+ N
Subjt:  MQAKIQMLTNKRDELKSLFKDDSDTH---TVETLQSSKKDFVVVKPR-LEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKIN

A0A6J1DUZ3 transcription factor bHLH118-like

2.0e-16

57.65

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Query:  MQAKIQMLTNKRDELKSLFKDDSDTHTVETLQSSKKDFVVVKPRLEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKIN
        MQ ++Q L++KR+ELK L  +DSD  T ETL +SK+D V V+PR EG QVV+DT TQH  P+S IL++LL   LEI+ CI+TKIN
Subjt:  MQAKIQMLTNKRDELKSLFKDDSDTHTVETLQSSKKDFVVVKPRLEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKIN

A0A6J1DZB0 transcription factor bHLH120-like

1.0e-12

53.85

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Query:  QAKIQMLTNKRDELKSLFKDD---SDTHTVETLQSSKKD--FVVVKPRLEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKINGS
        QA IQ L+NKRDELK L   D   SDT T+ETL SSK+D   V V  +  G QVV+ T T H  PLS IL++L+ Q  +I+SCI+TK+N S
Subjt:  QAKIQMLTNKRDELKSLFKDD---SDTHTVETLQSSKKD--FVVVKPRLEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKINGS

A0A6J1H558 transcription factor bHLH118-like

4.6e-13

53.93

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Query:  MQAKIQMLTNKRDELKSLFKDDSDTHTVETLQSSKKDFVVVKPRLE--GFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKINGS
        MQ++IQ+L NKRDELK +   +     VETL SSK+D V+V+ R E  G QVV++TATQH+ P+S IL+ L T+ LEI+S I+TK+N S
Subjt:  MQAKIQMLTNKRDELKSLFKDDSDTHTVETLQSSKKDFVVVKPRLE--GFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKINGS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G25410.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

5.0e-04

30.85

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Query:  QAKIQMLTNKRDELK----SLFKDDSDT-HTVETLQSSKKDFVVVKPRLEGFQVVV--DTATQHSFPLSMILKSLLTQNLEIISCITTKINGSL
        +A+I+ L+ +RDEL       +K + D   T   +  S+   V+V+P + G +VVV  +++   + PLS +L+++  + LE++S  TT++N  L
Subjt:  QAKIQMLTNKRDELK----SLFKDDSDT-HTVETLQSSKKDFVVVKPRLEGFQVVV--DTATQHSFPLSMILKSLLTQNLEIISCITTKINGSL

AT5G51790.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

1.0e-04

35.87

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Query:  QAKIQMLTNKRDELKSLFKDDSD-THTVETLQSSKKD--FVVVKPRLEGFQVVVDTATQ--HSFPLSMILKSLLTQNLEIISCITTKINGSL
        Q +I+ L+ +RDELK    D +  T +     SS+ +   V+V+P + GF+VVV +      ++PLS +L+ L  Q LE+IS +T ++N  L
Subjt:  QAKIQMLTNKRDELKSLFKDDSD-THTVETLQSSKKD--FVVVKPRLEGFQVVVDTATQ--HSFPLSMILKSLLTQNLEIISCITTKINGSL

Sequences

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CDS sequence

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ATGCAAGCCAAGATTCAAATGCTGACCAACAAAAGAGATGAGCTAAAGAGCCTTTTTAAGGATGATTCGGACACTCATACTGTCGAAACATTGCAATCTTCGAAAAAGGA
CTTTGTGGTAGTGAAGCCAAGATTGGAAGGATTTCAAGTTGTTGTAGACACGGCCACCCAACATAGCTTCCCACTTTCAATGATTCTAAAATCTCTACTTACACAAAATC
TCGAAATCATCAGCTGCATTACGACCAAGATAAATGGTAGTTTATAA

mRNA sequence

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Protein sequence

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MQAKIQMLTNKRDELKSLFKDDSDTHTVETLQSSKKDFVVVKPRLEGFQVVVDTATQHSFPLSMILKSLLTQNLEIISCITTKINGSL

CmoCh15G012440 (gene) of Cucurbita moschata (Rifu) v1 genome