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CmoCh15G012460 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G012460
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor bHLH118-like
Genome locationCmo_Chr15:8558787..8559194
RNA-Seq ExpressionCmoCh15G012460
SyntenyCmoCh15G012460
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:2000112 - regulation of cellular macromolecule biosynthetic process (biological process)
GO:0090575 - RNA polymerase II transcription factor complex (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR015660 - Achaete-scute transcription factor-related


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579462.1 Transcription factor basic helix-loop-helix 120, partial [Cucurbita argyrosperma subsp. sororia]8.4e-5382.35Show/hide
Query:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYL
        MHETVKYIQY+Q RI+QLSD+RD+LK+LS ENMA+   ETLNSSRRDSVVVRSKNGLGIQVVLDT +QHRLP+SN++RVLAVEGLEILSC+TTKVNERYL
Subjt:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYL

Query:  HTIECQIVDNDGCYPSIDVSELQHKLTN-LEYVPLD
        H IECQ V+NDG YPSIDV ELQHKLTN LEY+PLD
Subjt:  HTIECQIVDNDGCYPSIDVSELQHKLTN-LEYVPLD

KAG6579463.1 Transcription factor basic helix-loop-helix 126, partial [Cucurbita argyrosperma subsp. sororia]8.7e-5890.62Show/hide
Query:  IQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYLHTIECQI
        ++Y++TRIQQLSDQRDDLKSLS ENMA+ TGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLP+S+VIRVLAVEGLEILSC+TTKVNERYLHTIECQI
Subjt:  IQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYLHTIECQI

Query:  VDNDGCYPSIDVSELQHKLTNLEYVPLD
        VDNDGCYPSIDVS+LQHKL NLEYVPLD
Subjt:  VDNDGCYPSIDVSELQHKLTNLEYVPLD

KAG6579464.1 Transcription factor basic helix-loop-helix 126, partial [Cucurbita argyrosperma subsp. sororia]1.0e-5380Show/hide
Query:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYL
        MHETVKYIQ IQTRI+QLSDQRD+LKSLS+ENMA+ T ETLNSSRRDSVVV SKN LGIQVVL TATQHR+P+SN++RVL  EGLEI+SC+TTKVNERYL
Subjt:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYL

Query:  HTIECQIVDNDGCYPSIDVSELQHKLTNLEYVPLD
        HTIEC++V+N+GCYPSI+V EL+HKL NLEY PLD
Subjt:  HTIECQIVDNDGCYPSIDVSELQHKLTNLEYVPLD

XP_022922335.1 transcription factor bHLH118-like [Cucurbita moschata]4.5e-5482.96Show/hide
Query:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYL
        MHETVKYIQY+Q RI+QLSD+RD+LK+LS ENMA+   ETLNSSRRDSVVVRSKNGLGIQVVLDT TQHRLP+SN++RVLAVEGLEILSC+T KVNERYL
Subjt:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYL

Query:  HTIECQIVDNDGCYPSIDVSELQHKLTNLEYVPLD
        HTIECQ V++DG YPSIDV ELQHKLTNLEY+PLD
Subjt:  HTIECQIVDNDGCYPSIDVSELQHKLTNLEYVPLD

XP_022969885.1 transcription factor bHLH120-like [Cucurbita maxima]1.9e-5278.52Show/hide
Query:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYL
        MHETVKYIQ IQTRIQQLS+QRD+LKSLS ENM +   ETLNSSRRDSVVV S NGLGIQVVLDTA QHRLP+S++++VL  EGLEI+SC+TTKVNERYL
Subjt:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYL

Query:  HTIECQIVDNDGCYPSIDVSELQHKLTNLEYVPLD
        HTIECQ+V+NDGCYPSIDV EL+H+L NLEY+PL+
Subjt:  HTIECQIVDNDGCYPSIDVSELQHKLTNLEYVPLD

TrEMBL top hitse value%identityAlignment
A0A097IYN6 BHLH transcription factor4.1e-3762.32Show/hide
Query:  MHETVKYIQYIQTRIQQLSDQRDDLKSL-SDENMAIS-TGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNER
        M ETV YIQ++Q RIQQL D+R  L+ L S   +AI+ T ETLNSS R S VVR+K+G+GIQVVLDTAT+ RLP+S  ++ L  EGLEIL+C++ ++NER
Subjt:  MHETVKYIQYIQTRIQQLSDQRDDLKSL-SDENMAIS-TGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNER

Query:  YLHTIECQ-IVDNDGCYPSIDVSELQHKLTNLEYVPLD
        ++HTIECQ ++++DGCYP+IDVS LQHKL NLEY PLD
Subjt:  YLHTIECQ-IVDNDGCYPSIDVSELQHKLTNLEYVPLD

A0A1S4E6V7 transcription factor bHLH120-like2.1e-4164.96Show/hide
Query:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMA-ISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERY
        M ETV YIQ++Q RIQQL D+RD L+ L+++ M  I T ETLNSS RDSVVVR+K+G+GIQVVLDTAT+HRLP+S  ++ L  EGLEIL+C++ ++NER+
Subjt:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMA-ISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERY

Query:  LHTIECQ-IVDNDGCYPSIDVSELQHKLTNLEYVPLD
        +HTIECQ I+ +DGCYP+ID S LQHKL NLEY PLD
Subjt:  LHTIECQ-IVDNDGCYPSIDVSELQHKLTNLEYVPLD

A0A5A7TN30 Transcription factor bHLH120-like protein2.1e-4164.96Show/hide
Query:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMA-ISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERY
        M ETV YIQ++Q RIQQL D+RD L+ L+++ M  I T ETLNSS RDSVVVR+K+G+GIQVVLDTAT+HRLP+S  ++ L  EGLEIL+C++ ++NER+
Subjt:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMA-ISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERY

Query:  LHTIECQ-IVDNDGCYPSIDVSELQHKLTNLEYVPLD
        +HTIECQ I+ +DGCYP+ID S LQHKL NLEY PLD
Subjt:  LHTIECQ-IVDNDGCYPSIDVSELQHKLTNLEYVPLD

A0A6J1E8G7 transcription factor bHLH118-like2.2e-5482.96Show/hide
Query:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYL
        MHETVKYIQY+Q RI+QLSD+RD+LK+LS ENMA+   ETLNSSRRDSVVVRSKNGLGIQVVLDT TQHRLP+SN++RVLAVEGLEILSC+T KVNERYL
Subjt:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYL

Query:  HTIECQIVDNDGCYPSIDVSELQHKLTNLEYVPLD
        HTIECQ V++DG YPSIDV ELQHKLTNLEY+PLD
Subjt:  HTIECQIVDNDGCYPSIDVSELQHKLTNLEYVPLD

A0A6J1I182 transcription factor bHLH120-like9.1e-5378.52Show/hide
Query:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYL
        MHETVKYIQ IQTRIQQLS+QRD+LKSLS ENM +   ETLNSSRRDSVVV S NGLGIQVVLDTA QHRLP+S++++VL  EGLEI+SC+TTKVNERYL
Subjt:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYL

Query:  HTIECQIVDNDGCYPSIDVSELQHKLTNLEYVPLD
        HTIECQ+V+NDGCYPSIDV EL+H+L NLEY+PL+
Subjt:  HTIECQIVDNDGCYPSIDVSELQHKLTNLEYVPLD

SwissProt top hitse value%identityAlignment
Q9FLI0 Transcription factor bHLH1205.0e-0834.92Show/hide
Query:  VKYIQYIQTRIQQLSDQRDDLK-SLSDENMAISTGETLNSSRRDSVVVRSKNGL-GIQVVLDTATQ--HRLPISNVIRVLAVEGLEILSCVTTKVNERYL
        V +I+  QTRI+ LS +RD+LK  + D      +G    SSR +   V  +  + G +VV+ +        P+S V+ VL  +GLE++S +T +VNER +
Subjt:  VKYIQYIQTRIQQLSDQRDDLK-SLSDENMAISTGETLNSSRRDSVVVRSKNGL-GIQVVLDTATQ--HRLPISNVIRVLAVEGLEILSCVTTKVNERYL

Query:  HTIECQIVDNDGCYPSIDVSELQHKL
        +TI+ ++   D C+   D++ LQ KL
Subjt:  HTIECQIVDNDGCYPSIDVSELQHKL

Q9FLI1 Transcription factor bHLH362.5e-0729.58Show/hide
Query:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSS----RRDSVVVRSKNG-------LGIQVVLDTATQHRLP-ISNVIRVLAVEGLEIL
        ++E V YI+Y+Q +I++LS +RDDL       M +S G  L SS    + D  ++  KN        +G++++L +      P  S+V++VL+  GL +L
Subjt:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSS----RRDSVVVRSKNG-------LGIQVVLDTATQHRLP-ISNVIRVLAVEGLEIL

Query:  SCVTTKVNERYLHTIECQIVDNDGCYPSIDVSELQHKLTNLE
        + +++ V++R ++TI+ ++ D       ID++EL+ +L  ++
Subjt:  SCVTTKVNERYLHTIECQIVDNDGCYPSIDVSELQHKLTNLE

Q9STJ6 Transcription factor bHLH1263.0e-0832.81Show/hide
Query:  VKYIQYIQTRIQQLSDQRDDLKSLSDENMAIS-----TGETLNSSRRDSVVVRSK-NGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNER
        V +I+  + RI++LS +RD+L   + +    +     TG  +  S   +V+V+   +GL + V  +++    LP+S V+  +  +GLE++S  TT+VN+R
Subjt:  VKYIQYIQTRIQQLSDQRDDLKSLSDENMAIS-----TGETLNSSRRDSVVVRSK-NGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNER

Query:  YLHTIECQIVDNDGCYPSIDVSELQHKL
         +HTI+ + V++ GC   ID+  LQ KL
Subjt:  YLHTIECQIVDNDGCYPSIDVSELQHKL

Q9STJ7 Transcription factor bHLH1182.5e-0732.52Show/hide
Query:  VKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYLHTIE
        V YI Y+Q  I+ ++ +RDDL  LS  +   S  +  N    + VV+R    +GI++VL      + P S+V++VL   GL +L  + + VN+R +HT++
Subjt:  VKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYLHTIE

Query:  CQIVDNDGCYPSIDVSELQHKLT
         ++ D       ID+++L+  LT
Subjt:  CQIVDNDGCYPSIDVSELQHKLT

Arabidopsis top hitse value%identityAlignment
AT4G25400.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.8e-0832.52Show/hide
Query:  VKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYLHTIE
        V YI Y+Q  I+ ++ +RDDL  LS  +   S  +  N    + VV+R    +GI++VL      + P S+V++VL   GL +L  + + VN+R +HT++
Subjt:  VKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYLHTIE

Query:  CQIVDNDGCYPSIDVSELQHKLT
         ++ D       ID+++L+  LT
Subjt:  CQIVDNDGCYPSIDVSELQHKLT

AT4G25410.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.1e-0932.81Show/hide
Query:  VKYIQYIQTRIQQLSDQRDDLKSLSDENMAIS-----TGETLNSSRRDSVVVRSK-NGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNER
        V +I+  + RI++LS +RD+L   + +    +     TG  +  S   +V+V+   +GL + V  +++    LP+S V+  +  +GLE++S  TT+VN+R
Subjt:  VKYIQYIQTRIQQLSDQRDDLKSLSDENMAIS-----TGETLNSSRRDSVVVRSK-NGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNER

Query:  YLHTIECQIVDNDGCYPSIDVSELQHKL
         +HTI+ + V++ GC   ID+  LQ KL
Subjt:  YLHTIECQIVDNDGCYPSIDVSELQHKL

AT5G51780.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.8e-0829.58Show/hide
Query:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSS----RRDSVVVRSKNG-------LGIQVVLDTATQHRLP-ISNVIRVLAVEGLEIL
        ++E V YI+Y+Q +I++LS +RDDL       M +S G  L SS    + D  ++  KN        +G++++L +      P  S+V++VL+  GL +L
Subjt:  MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSS----RRDSVVVRSKNG-------LGIQVVLDTATQHRLP-ISNVIRVLAVEGLEIL

Query:  SCVTTKVNERYLHTIECQIVDNDGCYPSIDVSELQHKLTNLE
        + +++ V++R ++TI+ ++ D       ID++EL+ +L  ++
Subjt:  SCVTTKVNERYLHTIECQIVDNDGCYPSIDVSELQHKLTNLE

AT5G51790.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.6e-0934.92Show/hide
Query:  VKYIQYIQTRIQQLSDQRDDLK-SLSDENMAISTGETLNSSRRDSVVVRSKNGL-GIQVVLDTATQ--HRLPISNVIRVLAVEGLEILSCVTTKVNERYL
        V +I+  QTRI+ LS +RD+LK  + D      +G    SSR +   V  +  + G +VV+ +        P+S V+ VL  +GLE++S +T +VNER +
Subjt:  VKYIQYIQTRIQQLSDQRDDLK-SLSDENMAISTGETLNSSRRDSVVVRSKNGL-GIQVVLDTATQ--HRLPISNVIRVLAVEGLEILSCVTTKVNERYL

Query:  HTIECQIVDNDGCYPSIDVSELQHKL
        +TI+ ++   D C+   D++ LQ KL
Subjt:  HTIECQIVDNDGCYPSIDVSELQHKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGAAACGGTCAAGTACATTCAATATATTCAGACAAGAATCCAACAACTGTCTGATCAAAGAGATGACCTGAAAAGCCTTTCCGACGAGAATATGGCCATCAGTAC
GGGGGAAACGCTGAACTCCTCACGGAGGGATTCAGTGGTGGTGAGGTCAAAAAATGGATTAGGAATTCAAGTTGTTTTAGACACAGCCACCCAACATAGGCTCCCAATCT
CTAACGTTATTCGAGTTTTAGCCGTTGAAGGGCTTGAAATTCTGAGTTGCGTTACGACCAAAGTAAATGAGAGGTACCTTCATACCATTGAATGCCAAATTGTTGACAAT
GATGGCTGCTATCCAAGCATCGATGTGTCCGAGCTTCAGCATAAGTTAACCAATTTAGAATATGTTCCTTTAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATGAAACGGTCAAGTACATTCAATATATTCAGACAAGAATCCAACAACTGTCTGATCAAAGAGATGACCTGAAAAGCCTTTCCGACGAGAATATGGCCATCAGTAC
GGGGGAAACGCTGAACTCCTCACGGAGGGATTCAGTGGTGGTGAGGTCAAAAAATGGATTAGGAATTCAAGTTGTTTTAGACACAGCCACCCAACATAGGCTCCCAATCT
CTAACGTTATTCGAGTTTTAGCCGTTGAAGGGCTTGAAATTCTGAGTTGCGTTACGACCAAAGTAAATGAGAGGTACCTTCATACCATTGAATGCCAAATTGTTGACAAT
GATGGCTGCTATCCAAGCATCGATGTGTCCGAGCTTCAGCATAAGTTAACCAATTTAGAATATGTTCCTTTAGATTAG
Protein sequenceShow/hide protein sequence
MHETVKYIQYIQTRIQQLSDQRDDLKSLSDENMAISTGETLNSSRRDSVVVRSKNGLGIQVVLDTATQHRLPISNVIRVLAVEGLEILSCVTTKVNERYLHTIECQIVDN
DGCYPSIDVSELQHKLTNLEYVPLD