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CmoCh15G013360 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G013360
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionArabinogalactan protein
Genome locationCmo_Chr15:9158983..9159749
RNA-Seq ExpressionCmoCh15G013360
SyntenyCmoCh15G013360
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579545.1 Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia]8.7e-2898.63Show/hide
Query:  MAVVANKIPFGVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        MAVVANKIPFGVF GVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
Subjt:  MAVVANKIPFGVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

KAG7017004.1 Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma]3.0e-2898.63Show/hide
Query:  MAVVANKIPFGVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        MAVVANKIPFGVFFGVVFVLAM+LPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
Subjt:  MAVVANKIPFGVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

XP_004143956.1 arabinogalactan protein 41 [Cucumis sativus]3.4e-1675.34Show/hide
Query:  MAVVANKIPF-GVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA K+PF G+ F V  VL  L  A AQSL+PAQPPA  DGTSIDQGIAYVLMLLALVLTYIIHSADL +S
Subjt:  MAVVANKIPF-GVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

XP_008437371.1 PREDICTED: arabinogalactan peptide 22-like [Cucumis melo]8.1e-1878.08Show/hide
Query:  MAVVANKIPF-GVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA KIPF G+ F V  VL  L PACAQSL+PAQPPA SDGTSIDQGIAY LMLLALVLTYIIHSAD  +S
Subjt:  MAVVANKIPF-GVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

XP_023532560.1 arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]9.9e-1673.33Show/hide
Query:  MAVVA-NKIPFGVFFGVVFVLAMLLPACA--QSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        M VVA NK+P+GV   V FVLAML PA A   SL+PAQPP ASDGTS+DQGIAYVLMLLAL+LTYIIH A+L IS
Subjt:  MAVVA-NKIPFGVFFGVVFVLAMLLPACA--QSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

TrEMBL top hitse value%identityAlignment
A0A0A0KK44 Uncharacterized protein1.7e-1675.34Show/hide
Query:  MAVVANKIPF-GVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA K+PF G+ F V  VL  L  A AQSL+PAQPPA  DGTSIDQGIAYVLMLLALVLTYIIHSADL +S
Subjt:  MAVVANKIPF-GVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

A0A1S3ATI9 arabinogalactan peptide 22-like3.9e-1878.08Show/hide
Query:  MAVVANKIPF-GVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA KIPF G+ F V  VL  L PACAQSL+PAQPPA SDGTSIDQGIAY LMLLALVLTYIIHSAD  +S
Subjt:  MAVVANKIPF-GVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

A0A5D3C2F1 Arabinogalactan peptide 22-like3.9e-1878.08Show/hide
Query:  MAVVANKIPF-GVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA KIPF G+ F V  VL  L PACAQSL+PAQPPA SDGTSIDQGIAY LMLLALVLTYIIHSAD  +S
Subjt:  MAVVANKIPF-GVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

A0A6J1CXM0 arabinogalactan peptide 22-like1.5e-1263.29Show/hide
Query:  MAVVANKIPFGVF--FGVVFVLAMLLPACA----QSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        +  V N +P G+     V FVL   LP  A    +S++PAQP A SDGTSIDQGIAY LMLLALVLTYIIHSADLSISF
Subjt:  MAVVANKIPFGVF--FGVVFVLAMLLPACA----QSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

A0A6J1K4A3 arabinogalactan peptide 22-like4.1e-1572Show/hide
Query:  MAVVAN-KIPFGVFFGVVFVLAMLLPACA--QSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        M VVA  K+P+GV   V FVLAML PA A   SL+PAQPP ASDGTS+DQGIAYVLMLLAL+LTYIIH A+L IS
Subjt:  MAVVAN-KIPFGVFFGVVFVLAMLLPACA--QSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 164.2e-0957.35Show/hide
Query:  NKIPFGVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        N +     F  VF + + L A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S S+
Subjt:  NKIPFGVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

Q8L9T8 Arabinogalactan protein 414.2e-0963.93Show/hide
Query:  NKIPFGVFFGVVFVLAMLLP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH
        +++ FGV   V  + A+LLP A AQS APA P   SDGT+IDQGIAYVLML+ALVLTY+IH
Subjt:  NKIPFGVFFGVVFVLAMLLP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH

Q9FK16 Arabinogalactan protein 222.0e-0649.15Show/hide
Query:  KIPFGVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH
        K P  +    V +  +LLP      +   P   SDGTSIDQGIAYVLM++AL LTY IH
Subjt:  KIPFGVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH

Q9M373 Arabinogalactan protein 204.2e-0967.86Show/hide
Query:  FVLAMLLP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        FV A++ P A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S S
Subjt:  FVLAMLLP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 163.0e-1057.35Show/hide
Query:  NKIPFGVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        N +     F  VF + + L A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S S+
Subjt:  NKIPFGVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

AT3G61640.1 arabinogalactan protein 203.0e-1067.86Show/hide
Query:  FVLAMLLP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        FV A++ P A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S S
Subjt:  FVLAMLLP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

AT5G24105.1 arabinogalactan protein 413.0e-1063.93Show/hide
Query:  NKIPFGVFFGVVFVLAMLLP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH
        +++ FGV   V  + A+LLP A AQS APA P   SDGT+IDQGIAYVLML+ALVLTY+IH
Subjt:  NKIPFGVFFGVVFVLAMLLP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH

AT5G53250.1 arabinogalactan protein 221.4e-0749.15Show/hide
Query:  KIPFGVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH
        K P  +    V +  +LLP      +   P   SDGTSIDQGIAYVLM++AL LTY IH
Subjt:  KIPFGVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTCGTTGCTAATAAGATCCCCTTTGGCGTCTTCTTTGGTGTTGTTTTTGTTTTGGCTATGCTTCTCCCTGCTTGTGCTCAATCTCTGGCTCCGGCCCAACCTCC
TGCTGCTAGCGATGGGACAAGCATAGACCAGGGGATTGCCTATGTACTGATGCTGTTGGCCTTGGTGCTCACTTACATTATCCATTCAGCCGACCTTTCTATCAGTTTCT
AA
mRNA sequenceShow/hide mRNA sequence
TCGCTGTCTCCGGAACTGTCAACTGGCCGGTGGTCCTCAACCACCCCTCCCTTTTGACAGCTTCAAATCATCAACTCGGCCTATTTAATCTCTCTCTGCTGCGGCTCTCC
GGAGCCCCTGCAGGAGGTTTCGTCTCAACTTCTTCCATTTCTGAGAGACGTTGCAGAGAGAGATTTCGTTCTTCCATTTCAATTACCTTGTTTTTTCACCTAGAAGCTTC
TTCTTCCTTCAACAATGGCGGTCGTTGCTAATAAGATCCCCTTTGGCGTCTTCTTTGGTGTTGTTTTTGTTTTGGCTATGCTTCTCCCTGCTTGTGCTCAATCTCTGGCT
CCGGCCCAACCTCCTGCTGCTAGCGATGGGACAAGCATAGACCAGGGGATTGCCTATGTACTGATGCTGTTGGCCTTGGTGCTCACTTACATTATCCATTCAGCCGACCT
TTCTATCAGTTTCTAAATTTCATCCACAAAATAACTAGATTCAGATATTACAGAGCTGGAATTTAAACATGGGGTTCAAGAATTTATCACGTTTTTTTTTTTTTTTTTTG
CTTTCTGGTTTAATGTCAAGAACTGAGCTTTACATGTAGAAGAATGCAATCATAATGCAGACTATCTTTTTGGACTACAAACTTTCAAACCTCTAATTTGAATGCTTACT
GTTTAATGCTTAT
Protein sequenceShow/hide protein sequence
MAVVANKIPFGVFFGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF