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CmoCh15G013930 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G013930
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRING-H2 finger protein ATL2-like
Genome locationCmo_Chr15:9479006..9479494
RNA-Seq ExpressionCmoCh15G013930
SyntenyCmoCh15G013930
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022159502.1 RING-H2 finger protein ATL2-like [Momordica charantia]4.7e-5865.71Show/hide
Query:  MGFFYFAINGHRCSQILHFFTRILLR-------FGLLKPSPE--HHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEF
        MGF YFAINGHRCSQILHFFT I  R        G+LKP P+    AD     PTSY+F+T+G CPSLVTVP  DLQARIK SLPIVEFGDFAAK  ++F
Subjt:  MGFFYFAINGHRCSQILHFFTRILLR-------FGLLKPSPE--HHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEF

Query:  GGN----DGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRFLR
          +    + EEE   CTICL++ME+SE MRELSNCCHVFH+ECLDTWIDEFQITCP+CRS+LLP+G+G G R+ R
Subjt:  GGN----DGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRFLR

XP_022996076.1 RING-H2 finger protein ATL46-like [Cucurbita maxima]3.0e-5767.65Show/hide
Query:  MGFFYFAINGHRCSQILH-FFTRILLR-------FGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFG
        MGF +FAIN    SQILH  FTRILL+       FGL+KPSPE  ADSPF+ PTSY+ LT+G  PSLVTVP  DLQ RIK SLPI+E+GDF  KQG    
Subjt:  MGFFYFAINGHRCSQILH-FFTRILLR-------FGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFG

Query:  GNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRFLR
         N  +EENR CTICL EMERSE MREL NCCHVFHR+CLDTWIDEF+ITCPVCRS+L P+G+G GF F+R
Subjt:  GNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRFLR

XP_023520502.1 RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo]1.9e-8390.53Show/hide
Query:  MGFFYFAINGHRCSQILHFFTRILL-------RFGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFGG
        MGFF FAINGHRC QILHFFTRILL       RFGLLKPSPEHHADSPFQPPTSYLFLTD PCPSLVTVP ADLQARIKNSLPIVEFGDFAAKQGIEFGG
Subjt:  MGFFYFAINGHRCSQILHFFTRILL-------RFGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFGG

Query:  NDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRFLR
        NDGEEENRMCTICL+EMERSE MREL NC HVFHRECLDTWIDEFQITCPVCRS LLPSGDGGGFRFLR
Subjt:  NDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRFLR

XP_023533023.1 RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo]1.4e-5470.78Show/hide
Query:  MGFFYFAINGHRCSQILHFFTRILLR-------FGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFGG
        MGF +FAING R SQILH FTRILL+       FGL+KPSPEH A+SPF+ PTSY+ LT+G  PSLVTVP  DLQARIK SLPI+E+GDF  KQG     
Subjt:  MGFFYFAINGHRCSQILHFFTRILLR-------FGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFGG

Query:  NDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRS
           +EENR CTICL EMERSE MRELSNCCHVFH +CLDTWIDEF+ITCPVCRS
Subjt:  NDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRS

XP_038907243.1 RING-H2 finger protein ATL2-like [Benincasa hispida]1.9e-6773.96Show/hide
Query:  MGFFYFAINGHRCSQILHFFTRILLR-------FGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFGG
        MGF YF+IN H CSQILHFFT ILL+       F LLK SPEH+ADSPF  PTS++FLT+GPC SLVTVP ADLQ RIK SLPIV F DF AKQG+EFG 
Subjt:  MGFFYFAINGHRCSQILHFFTRILLR-------FGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFGG

Query:  NDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRFLR
        N+ +EENR+CT+CL EMERSE+MREL NCCHVFHREC D WIDEFQITCPVCRSLLLP+G+GGGFRF +
Subjt:  NDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRFLR

TrEMBL top hitse value%identityAlignment
A0A2G9G363 RING-type domain-containing protein4.6e-2743.48Show/hide
Query:  MGFFYFAINGHRCSQIL----------HFFTRILLRFGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIE
        MGF Y+AI   +   I            FF   L   GL KP PE  ++S      +Y+ + DG  PSLV VPV  +   IKN +PI+++ DF  +   E
Subjt:  MGFFYFAINGHRCSQIL----------HFFTRILLRFGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIE

Query:  FGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLP
          G +G    ++C+ICL  +E    +REL NC H+FHRECLDTWIDE Q+TCP+CRS+LLP
Subjt:  FGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLP

A0A2Z7BRP5 RING-type domain-containing protein8.4e-2944.68Show/hide
Query:  FTRILLRFGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMREL
        FT  L R G+ KP PE   + P     +Y+F+ DG  PSLV +PV  + A IK  +PI+++ D A + G E G    + +  +CT+CL  +  S+ +REL
Subjt:  FTRILLRFGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMREL

Query:  SNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRF
        SNC HVFHR+CLD W+DE Q+TCP+CRS+LLP      + F
Subjt:  SNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRF

A0A5B7BME5 Putative Brassinosteroid-responsive RING-H22.7e-2744.93Show/hide
Query:  FTRILLRFGLLKPSP---EHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQG--IEFGGNDGEEENRMCTICLNEMERSE
        F   L   G+LK +P   E   +  F    S + + DG  PSLV +PV  + A IK  LP++++GDF  K+   ++      EEE++ C +CL+ +E   
Subjt:  FTRILLRFGLLKPSP---EHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQG--IEFGGNDGEEENRMCTICLNEMERSE

Query:  AMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPS
         +REL NCCHVFHRECLD+W+DE Q+TCP+CRS+LLPS
Subjt:  AMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPS

A0A6J1E009 RING-H2 finger protein ATL2-like2.3e-5865.71Show/hide
Query:  MGFFYFAINGHRCSQILHFFTRILLR-------FGLLKPSPE--HHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEF
        MGF YFAINGHRCSQILHFFT I  R        G+LKP P+    AD     PTSY+F+T+G CPSLVTVP  DLQARIK SLPIVEFGDFAAK  ++F
Subjt:  MGFFYFAINGHRCSQILHFFTRILLR-------FGLLKPSPE--HHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEF

Query:  GGN----DGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRFLR
          +    + EEE   CTICL++ME+SE MRELSNCCHVFH+ECLDTWIDEFQITCP+CRS+LLP+G+G G R+ R
Subjt:  GGN----DGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRFLR

A0A6J1K3P6 RING-H2 finger protein ATL46-like1.5e-5767.65Show/hide
Query:  MGFFYFAINGHRCSQILH-FFTRILLR-------FGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFG
        MGF +FAIN    SQILH  FTRILL+       FGL+KPSPE  ADSPF+ PTSY+ LT+G  PSLVTVP  DLQ RIK SLPI+E+GDF  KQG    
Subjt:  MGFFYFAINGHRCSQILH-FFTRILLR-------FGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFG

Query:  GNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRFLR
         N  +EENR CTICL EMERSE MREL NCCHVFHR+CLDTWIDEF+ITCPVCRS+L P+G+G GF F+R
Subjt:  GNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRFLR

SwissProt top hitse value%identityAlignment
P93823 RING-H2 finger protein ATL13.8e-1035.14Show/hide
Query:  SLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRS
        ++P+ +F     K+ +  G  D  + ++ C++CLNE +  E +R + NCCHVFH +C+D W+ +    CP+CR+
Subjt:  SLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRS

Q84W40 RING-H2 finger protein ATL112.5e-0948.98Show/hide
Query:  CTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLP
        C++CLNE E  E +R +  CCHVFH  C+D W+     TCP+CR+ L+P
Subjt:  CTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLP

Q9FL07 RING-H2 finger protein ATL461.1e-0929.29Show/hide
Query:  SQILHFFTRILLRFGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERS
        S +LH    +L+RF +  PS    + S   P  S           L  +  + L     ++LP+  + +     G   GGN   +E   C +CL E    
Subjt:  SQILHFFTRILLRFGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERS

Query:  EAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSG
        + +R L  C H FH  C+DTW+ +   TCP+CR  L   G
Subjt:  EAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSG

Q9SK92 E3 ubiquitin-protein ligase ATL151.1e-0951.02Show/hide
Query:  CTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLP
        C +CLNE E  E +R +  CCHVFH  C+D W+   Q TCP+CR+ L+P
Subjt:  CTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLP

Q9XF92 Brassinosteroid-responsive RING protein 13.1e-1239.51Show/hide
Query:  IKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLP
        I+  LP+++F +           N GE+    C +CL E E  + +R L NC H+FHR CLD W+D  Q TCP+CR+  +P
Subjt:  IKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLP

Arabidopsis top hitse value%identityAlignment
AT1G04360.1 RING/U-box superfamily protein2.7e-1135.14Show/hide
Query:  SLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRS
        ++P+ +F     K+ +  G  D  + ++ C++CLNE +  E +R + NCCHVFH +C+D W+ +    CP+CR+
Subjt:  SLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRS

AT1G63840.1 RING/U-box superfamily protein2.7e-1137.18Show/hide
Query:  LPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEF-QITCPVCRSLLLP
        LP+V F D                E+  C +CL + E  + +R L+NC H+FHR CLD W+  + Q+TCP+CR+  +P
Subjt:  LPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEF-QITCPVCRSLLLP

AT3G43430.1 RING/U-box superfamily protein4.9e-1338.89Show/hide
Query:  IKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWI--------DEFQITCPVCRSLLLPS
        IK SL +  F D   +             N MC +CL ++E  + +REL NC HVFHR+C+D W+        D+   TCP+CR+ LLPS
Subjt:  IKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWI--------DEFQITCPVCRSLLLPS

AT3G61460.1 brassinosteroid-responsive RING-H22.2e-1339.51Show/hide
Query:  IKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLP
        I+  LP+++F +           N GE+    C +CL E E  + +R L NC H+FHR CLD W+D  Q TCP+CR+  +P
Subjt:  IKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLP

AT5G20885.1 RING/U-box superfamily protein6.0e-1133.03Show/hide
Query:  CPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWID--------------EFQIT
        CPS+ +         IK SL +  F D A +             N  C +CL ++E  + +REL NC H+FHREC+D W+D              +   T
Subjt:  CPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEMERSEAMRELSNCCHVFHRECLDTWID--------------EFQIT

Query:  CPVCRSLLL
        CP+CR+ LL
Subjt:  CPVCRSLLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTCTTCTATTTCGCCATTAACGGCCACAGATGCTCTCAAATCCTCCATTTCTTCACCAGAATCCTTCTCCGTTTCGGCCTCCTCAAGCCCTCGCCGGAGCACCA
TGCCGACTCTCCCTTCCAGCCTCCGACCAGTTACCTCTTCCTCACCGATGGCCCCTGCCCTTCGCTGGTCACCGTTCCGGTGGCTGATTTGCAGGCCAGGATCAAGAACA
GCCTCCCAATCGTCGAGTTTGGGGATTTTGCTGCAAAACAGGGGATTGAATTTGGGGGAAACGACGGAGAAGAAGAGAATCGGATGTGTACGATCTGTTTGAACGAAATG
GAGAGATCGGAGGCGATGAGAGAGCTCTCTAATTGCTGCCATGTCTTCCATCGGGAGTGTTTGGATACGTGGATTGATGAGTTTCAGATTACGTGCCCTGTTTGTAGATC
TTTGCTTTTGCCCTCCGGTGACGGCGGTGGGTTTCGATTCCTCCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTTCTTCTATTTCGCCATTAACGGCCACAGATGCTCTCAAATCCTCCATTTCTTCACCAGAATCCTTCTCCGTTTCGGCCTCCTCAAGCCCTCGCCGGAGCACCA
TGCCGACTCTCCCTTCCAGCCTCCGACCAGTTACCTCTTCCTCACCGATGGCCCCTGCCCTTCGCTGGTCACCGTTCCGGTGGCTGATTTGCAGGCCAGGATCAAGAACA
GCCTCCCAATCGTCGAGTTTGGGGATTTTGCTGCAAAACAGGGGATTGAATTTGGGGGAAACGACGGAGAAGAAGAGAATCGGATGTGTACGATCTGTTTGAACGAAATG
GAGAGATCGGAGGCGATGAGAGAGCTCTCTAATTGCTGCCATGTCTTCCATCGGGAGTGTTTGGATACGTGGATTGATGAGTTTCAGATTACGTGCCCTGTTTGTAGATC
TTTGCTTTTGCCCTCCGGTGACGGCGGTGGGTTTCGATTCCTCCGGTGA
Protein sequenceShow/hide protein sequence
MGFFYFAINGHRCSQILHFFTRILLRFGLLKPSPEHHADSPFQPPTSYLFLTDGPCPSLVTVPVADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLNEM
ERSEAMRELSNCCHVFHRECLDTWIDEFQITCPVCRSLLLPSGDGGGFRFLR