CuGenDBv2

Gene ID	CmoCh15G014470
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S20
Genome location	Cmo_Chr15:9832550..9834809
RNA-Seq Expression	CmoCh15G014470
Synteny	CmoCh15G014470
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001848 - Ribosomal protein S10 IPR018268 - Ribosomal protein S10, conserved site IPR027486 - Ribosomal protein S10 domain IPR036838 - Ribosomal protein S10 domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6576788.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia]

3.6e-32

96.1

Show/hide

Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGE +
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

KAG6605675.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-32

97.4

Show/hide

Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGE +
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

XP_022922646.1 40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata]

3.6e-32

96.1

Show/hide

Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGE +
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

XP_022929156.1 40S ribosomal protein S20-2 [Cucurbita moschata]

1.2e-32

97.4

Show/hide

Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGE +
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

XP_022985516.1 40S ribosomal protein S20-2-like [Cucurbita maxima]

3.6e-32

96.1

Show/hide

Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGE +
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1E3W2 40S ribosomal protein S20-2-like isoform X2

1.7e-32

96.1

Show/hide

Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGE +
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

A0A6J1E4N9 40S ribosomal protein S20-2-like isoform X1

1.7e-32

96.1

Show/hide

Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGE +
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

A0A6J1H2U8 40S ribosomal protein S20-2

5.9e-33

97.4

Show/hide

Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGE +
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

A0A6J1I3A7 40S ribosomal protein S20-2

5.9e-33

97.4

Show/hide

Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGE +
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

A0A6J1J8F7 40S ribosomal protein S20-2-like

1.7e-32

96.1

Show/hide

Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGE +
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

SwissProt top hits

e value

%identity

Alignment

P23403 40S ribosomal protein S20

1.1e-20

71.43

Show/hide

Query:  PTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        P KA + D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGE S
Subjt:  PTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

P35686 40S ribosomal protein S20

7.5e-25

Show/hide

Query:  MAYA-AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEASPGARLTDGLARGLGKTEVQTHG
        +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTKVLHITTRKSPCGE   G    D       + E++ H 
Subjt:  MAYA-AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEASPGARLTDGLARGLGKTEVQTHG

Query:  TDLNFVSISGLLTSLALLTL
          ++ VS + ++  +  +T+
Subjt:  TDLNFVSISGLLTSLALLTL

P49200 40S ribosomal protein S20-1

2.9e-29

85.53

Show/hide

Query:  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGE +
Subjt:  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

Q3ZBH8 40S ribosomal protein S20

2.5e-20

67.12

Show/hide

Query:  AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGE S
Subjt:  AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

Q9STY6 40S ribosomal protein S20-2

3.5e-30

87.01

Show/hide

Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGE +
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

Arabidopsis top hits

e value

%identity

Alignment

AT3G45030.1 Ribosomal protein S10p/S20e family protein

2.1e-30

85.53

Show/hide

Query:  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGE +
Subjt:  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

AT3G47370.1 Ribosomal protein S10p/S20e family protein

2.5e-31

87.01

Show/hide

Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGE +
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

AT3G47370.2 Ribosomal protein S10p/S20e family protein

2.5e-31

87.01

Show/hide

Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGE +
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

AT3G47370.3 Ribosomal protein S10p/S20e family protein

2.5e-31

87.01

Show/hide

Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGE +
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

AT5G62300.1 Ribosomal protein S10p/S20e family protein

2.1e-30

85.53

Show/hide

Query:  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS
        AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGE +
Subjt:  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEAS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGATGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTT
GAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTTAAGGGGCCTGTGAGGATGCCAACCAAAGTCCTGCACATCACCACCAGGAAA
TCTCCCTGCGGTGAAGCCTCTCCCGGCGCTCGCCTAACCGATGGTCTGGCACGTGGCCTTGGAAAGACCGAGGTACAAACACATGGGACAGATTTGAACTTCGTG
TCCATAAGCGGGTTATTGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACATCCATCACCATCGAACCGGGTGTTGAGGTTGAAGTCACAATTGCAGATT
GATGTGTTTTCCAATATTTCCCGAGTTCTATACTCTGCTCGTAGTTATTTAGAGGTCTATGTACTCTGTGTGTCTGCCCTGCTTCAAATCTGA

mRNA sequence

Show/hide mRNA sequence

ATCTTCCTCCTCCCTAAATCCTCCAACTGCAGAACCTAGCAGCGGAAGCCGCCCTTGCTCCGGAAGTAAGCAAATATGGCGTATGCAGCGATGAAGCCTACGAAG
GCTGGTTTGGAGGATGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGT
GCCAAGGACAAGAGATTGAGGGTTAAGGGGCCTGTGAGGATGCCAACCAAAGTCCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGCCTCTCCCGGCGCT
CGCCTAACCGATGGTCTGGCACGTGGCCTTGGAAAGACCGAGGTACAAACACATGGGACAGATTTGAACTTCGTGTCCATAAGCGGGTTATTGACCTCTTTAGCT
CTGCTGACGTTGTTAAGCAGATCACATCCATCACCATCGAACCGGGTGTTGAGGTTGAAGTCACAATTGCAGATTGATGTGTTTTCCAATATTTCCCGAGTTCTA
TACTCTGCTCGTAGTTATTTAGAGGTCTATGTACTCTGTGTGTCTGCCCTGCTTCAAATCTGAAATGTTAAGGTTAATGCATTATCATCCATTTTTGTCATAATT
TTGAAGTTCATAACTTATTTTGAGAGGAAGATTTTGGCCTGCTGTTATTTCGTTTATATATCTTTGAATTATGTATTTGGATCAGAAGTTAGAATATAACGTAAT
GTGCTTTTATTTTTAAAATGTGAATGGTCTTTCAAACCTGCCACTCTCATCTAATTGTGTTTCACCTCGTACGCTAAGAACATCGTAGATTGTGAGAATATGGTA
TGAATTCTTAGAAATGGAATGTTGATTTTGGTCTCCTTGGAATAATTTCTATATTGTGTACACCAC

Protein sequence

Show/hide protein sequence

MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEASPGARLTDGLARGLGKTEVQTHGTDLNFV
SISGLLTSLALLTLLSRSHPSPSNRVLRLKSQLQIDVFSNISRVLYSARSYLEVYVLCVSALLQI

CmoCh15G014470 (gene) of Cucurbita moschata (Rifu) v1 genome