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CmoCh15G014500 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G014500
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPhotolyase/cryptochrome alpha/beta domain-containing protein
Genome locationCmo_Chr15:9841248..9841671
RNA-Seq ExpressionCmoCh15G014500
SyntenyCmoCh15G014500
Gene Ontology termsNA
InterPro domainsIPR006050 - DNA photolyase, N-terminal
IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold
IPR036155 - Cryptochrome/photolyase, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579658.1 Pheophytinase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.5e-37100Show/hide
Query:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
        MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
Subjt:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
XP_022928782.1 uncharacterized protein LOC111435603 isoform X1 [Cucurbita moschata]1.5e-37100Show/hide
Query:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
        MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
Subjt:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
XP_022970224.1 uncharacterized protein LOC111469174 isoform X1 [Cucurbita maxima]3.6e-3697.59Show/hide
Query:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
        MSIFTFSPSPSLSFFTPPTPPRRSSAFPAA  SSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
Subjt:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
XP_023550061.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111808364 [Cucurbita pepo subsp. pepo]1.2e-3495.18Show/hide
Query:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
        MSIFTFSPSPSLSFFTPP+P RRSSAFPAA  SSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
Subjt:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
XP_038875212.1 uncharacterized protein LOC120067727 isoform X3 [Benincasa hispida]3.4e-2680.72Show/hide
Query:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
        MSIF FSPS S  FF+PP P RRSSAFPA TQSSAN NT  G LA+LWFKHDLRI DHPALHAAAS FPALIPLYIFDSR+LS
Subjt:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
TrEMBL top hitse value%identityAlignment
A0A0A0KNA5 Photolyase/cryptochrome alpha/beta domain-containing protein5.1e-2068.67Show/hide
Query:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
        MSIF FSPS    F  PP P RRSS FP  T SS   N + G LA+LWFKHDLRI DHPALHAA+SQF +LIPLYIFDSR+LS
Subjt:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
A0A1S3AUM6 uncharacterized protein LOC1034830478.1e-1867.86Show/hide
Query:  MSIFTFSPSPSLSFFTPPTP-PRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
        MSIF FSPS    F  PPTP  RRSS F A T SS   N + G LA+LW KHDLRI DHPALHAA+S FP+LIPLYIFDSR+LS
Subjt:  MSIFTFSPSPSLSFFTPPTP-PRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
A0A6J1E553 uncharacterized protein LOC111026138 isoform X12.2e-1557.61Show/hide
Query:  MSIFTFSPSPSLSFFTP----PTPPRRSSAF-----PAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
        M IF F  S S+ F T     PTPPRR S+      PA  +  +  ++  GG+A+LWFKHDLRIDDHPALH AAS FPAL+PLYIFDSR+LS
Subjt:  MSIFTFSPSPSLSFFTP----PTPPRRSSAF-----PAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
A0A6J1EKW5 uncharacterized protein LOC111435603 isoform X17.0e-38100Show/hide
Query:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
        MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
Subjt:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
A0A6J1I4X4 uncharacterized protein LOC111469174 isoform X11.7e-3697.59Show/hide
Query:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
        MSIFTFSPSPSLSFFTPPTPPRRSSAFPAA  SSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
Subjt:  MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
SwissProt top hitse value%identityAlignment
Q84KJ5 Cryptochrome DASH, chloroplastic/mitochondrial3.8e-0438.46Show/hide
Query:  ATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRL
        A  SS+++     G+ +LWF++DLR+ D+ AL+ A S    ++P+Y  D RL
Subjt:  ATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRL
Arabidopsis top hitse value%identityAlignment
AT4G25290.1 DNA photolyases;DNA photolyases4.0e-0960Show/hide
Query:  TVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
        T  G  A++WFKHDLR+DDHP L  AAS+  A+IPLY+ D R+LS
Subjt:  TVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLS
AT5G24850.1 cryptochrome 32.7e-0538.46Show/hide
Query:  ATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRL
        A  SS+++     G+ +LWF++DLR+ D+ AL+ A S    ++P+Y  D RL
Subjt:  ATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATCTTCACCTTCTCCCCTTCTCCTTCTCTTTCCTTCTTCACTCCTCCAACTCCTCCCCGTCGTTCTTCTGCATTTCCGGCGGCAACGCAATCCTCTGCCAATCT
CAACACCGTAGCCGGAGGACTCGCCCTTCTTTGGTTCAAACATGACCTCCGAATCGACGATCATCCTGCTCTCCATGCCGCCGCCTCCCAGTTTCCCGCTCTCATCCCTC
TTTACATCTTCGATTCCCGCTTACTTTCGCTGTCTGCCATTAGATGA
mRNA sequenceShow/hide mRNA sequence
CAAAAATATCTGAGGAGCCTCAACTTCCACAGCCACAAACTCTCTGGAAAACCGATCTTTGTCCTTCATCTCCATTTCCATGTCCATCTTCACCTTCTCCCCTTCTCCTT
CTCTTTCCTTCTTCACTCCTCCAACTCCTCCCCGTCGTTCTTCTGCATTTCCGGCGGCAACGCAATCCTCTGCCAATCTCAACACCGTAGCCGGAGGACTCGCCCTTCTT
TGGTTCAAACATGACCTCCGAATCGACGATCATCCTGCTCTCCATGCCGCCGCCTCCCAGTTTCCCGCTCTCATCCCTCTTTACATCTTCGATTCCCGCTTACTTTCGCT
GTCTGCCATTAGATGA
Protein sequenceShow/hide protein sequence
MSIFTFSPSPSLSFFTPPTPPRRSSAFPAATQSSANLNTVAGGLALLWFKHDLRIDDHPALHAAASQFPALIPLYIFDSRLLSLSAIR