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CmoCh15G014560 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G014560
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L7a
Genome locationCmo_Chr15:9869570..9870083
RNA-Seq ExpressionCmoCh15G014560
SyntenyCmoCh15G014560
Gene Ontology termsGO:0000470 - maturation of LSU-rRNA (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001921 - Ribosomal protein L7A/L8
IPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579662.1 60S ribosomal protein L7a-2, partial [Cucurbita argyrosperma subsp. sororia]2.1e-3793.26Show/hide
Query:  RFFAPKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        R  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNL   +
Subjt:  RFFAPKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

XP_022928907.1 60S ribosomal protein L7a-2 isoform X2 [Cucurbita moschata]4.7e-3795.35Show/hide
Query:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNL   +
Subjt:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

XP_022928908.1 60S ribosomal protein L7a-2-like isoform X1 [Cucurbita moschata]4.7e-3795.35Show/hide
Query:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNL   +
Subjt:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

XP_022934368.1 60S ribosomal protein L7a-2 [Cucurbita moschata]4.7e-3795.35Show/hide
Query:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNL   +
Subjt:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

XP_022970188.1 60S ribosomal protein L7a-2-like [Cucurbita maxima]4.7e-3795.35Show/hide
Query:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNL   +
Subjt:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

TrEMBL top hitse value%identityAlignment
A0A6J1EL96 60S ribosomal protein L7a2.3e-3795.35Show/hide
Query:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNL   +
Subjt:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

A0A6J1ELL6 60S ribosomal protein L7a2.3e-3795.35Show/hide
Query:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNL   +
Subjt:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

A0A6J1HZX8 60S ribosomal protein L7a2.3e-3795.35Show/hide
Query:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNL   +
Subjt:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

A0A6J1I354 60S ribosomal protein L7a2.3e-3795.35Show/hide
Query:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNL   +
Subjt:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

A0A6J1J2M5 60S ribosomal protein L7a2.3e-3795.35Show/hide
Query:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNL   +
Subjt:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

SwissProt top hitse value%identityAlignment
P0DKK7 60S ribosomal protein L7a-25.7e-3077.27Show/hide
Query:  APKKAVGKA--LAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APK+  G+A   AKKK EKV NPLFEKRPKQFGIGGALPPK+DL RFVKWPK V+IQR++RILKQRLKVPPALNQFT+TLDKNL   +
Subjt:  APKKAVGKA--LAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

P35685 60S ribosomal protein L7a-15.7e-3077.27Show/hide
Query:  APKKAVGKA--LAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APK+  G+A   AKKK EKV NPLFEKRPKQFGIGGALPPK+DL RFVKWPK V+IQR++RILKQRLKVPPALNQFT+TLDKNL   +
Subjt:  APKKAVGKA--LAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

P49692 60S ribosomal protein L7a-15.2e-3174.42Show/hide
Query:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APKK V  A  KK  EKV NPLFE+RPKQFGIGGALPPK+DL+R++KWPK++++QR+KRILKQRLKVPPALNQFTKTLDKNL   +
Subjt:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

Q2TBQ5 60S ribosomal protein L7a5.8e-2257.14Show/hide
Query:  KKAVGKALA-------KKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        KKA GK +A       K++ +KVVNPLFEKRPK FGIG  + PKRDLTRFVKWP+ +++QR++ IL +RLKVPPA+NQFT+ LD+    ++
Subjt:  KKAVGKALA-------KKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

Q9LZH9 60S ribosomal protein L7a-22.8e-3276.74Show/hide
Query:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APKK V K  +KKKPEKV NPLFE+RPKQFGIGGALPPK+DL+R++KWPK++++QR+KRILKQRLKVPPALNQFTKTLDKNL   +
Subjt:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

Arabidopsis top hitse value%identityAlignment
AT2G47610.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein3.7e-3274.42Show/hide
Query:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APKK V  A  KK  EKV NPLFE+RPKQFGIGGALPPK+DL+R++KWPK++++QR+KRILKQRLKVPPALNQFTKTLDKNL   +
Subjt:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI

AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.0e-3376.74Show/hide
Query:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI
        APKK V K  +KKKPEKV NPLFE+RPKQFGIGGALPPK+DL+R++KWPK++++QR+KRILKQRLKVPPALNQFTKTLDKNL   +
Subjt:  APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAGTACCTTCGATTCTTCGCACCGAAGAAGGCTGTTGGAAAAGCTTTGGCGAAGAAGAAGCCGGAGAAGGTGGTGAACCCGCTATTTGAGAAGCGTCCAAAGCA
ATTTGGAATCGGTGGGGCATTGCCGCCGAAGAGGGATCTCACACGGTTCGTCAAATGGCCGAAAGCTGTTCAAATTCAGAGGAAGAAGAGGATTCTCAAGCAGAGGCTCA
AGGTTCCACCAGCTTTGAATCAGTTCACCAAGACCCTCGACAAGAATCTTGGTAATAAAATCGAATATCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCAGTACCTTCGATTCTTCGCACCGAAGAAGGCTGTTGGAAAAGCTTTGGCGAAGAAGAAGCCGGAGAAGGTGGTGAACCCGCTATTTGAGAAGCGTCCAAAGCA
ATTTGGAATCGGTGGGGCATTGCCGCCGAAGAGGGATCTCACACGGTTCGTCAAATGGCCGAAAGCTGTTCAAATTCAGAGGAAGAAGAGGATTCTCAAGCAGAGGCTCA
AGGTTCCACCAGCTTTGAATCAGTTCACCAAGACCCTCGACAAGAATCTTGGTAATAAAATCGAATATCTGTGA
Protein sequenceShow/hide protein sequence
MDQYLRFFAPKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGNKIEYL