CuGenDBv2

Gene ID	CmoCh15G014630
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	MADS-box protein AGL42-like
Genome location	Cmo_Chr15:9931669..9934895
RNA-Seq Expression	CmoCh15G014630
Synteny	CmoCh15G014630
Gene Ontology terms	GO:0009838 - abscission (biological process) GO:0009909 - regulation of flower development (biological process) GO:0010150 - leaf senescence (biological process) GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process) GO:0080187 - floral organ senescence (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function) GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR002100 - Transcription factor, MADS-box IPR033896 - MADS MEF2-like IPR036879 - Transcription factor, MADS-box superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579670.1 MADS-box protein AGL42, partial [Cucurbita argyrosperma subsp. sororia]

2.4e-35

100

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Query:  MKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ
        MKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ
Subjt:  MKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ

KAG7017119.1 MADS-box protein AGL42 [Cucurbita argyrosperma subsp. argyrosperma]

3.6e-39

100

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ
        MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ

XP_022928910.1 MADS-box protein AGL42-like [Cucurbita moschata]

3.6e-39

100

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ
        MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ

XP_022969948.1 MADS-box protein AGL42-like [Cucurbita maxima]

2.3e-38

97.73

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ
        MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQ+GRLYEFSSSIMQKTIERYRK+GKGGETNTFQSEGYMQ
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ

XP_023549807.1 MADS-box protein AGL42-like [Cucurbita pepo subsp. pepo]

3.6e-39

100

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ
        MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KL39 Uncharacterized protein

2.0e-35

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL
        MVRGKVEMKRIENSTSRQVTFSKRRNG+LKKAYELSVLCDAEVSVIIFSQKGRLYEFSSS MQKTIERYRK+GK G++N F+SEGYMQ L
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL

A0A1S4E646 MADS-box protein AGL42-like

2.6e-35

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL
        MVRGKVEMKRIENSTSRQVTFSKRRNG+LKKAYELSVLCDAEVSVIIFSQKGRLYEFSSS MQKTIERYRK+GK G++N F+SEGYMQ L
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL

A0A6J1BSU4 MADS-box protein AGL42-like isoform X1

5.8e-35

87.78

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL
        MVRGKVEMKRIENSTSRQVTFSKRRNG+LKKAYELSVLCDA+VSV+IFSQKGRLYEFSSS MQK+IERY KYGK G+TN F+SEGYMQ L
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL

A0A6J1EST4 MADS-box protein AGL42-like

1.7e-39

100

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ
        MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ

A0A6J1I2F0 MADS-box protein AGL42-like

1.1e-38

97.73

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ
        MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQ+GRLYEFSSSIMQKTIERYRK+GKGGETNTFQSEGYMQ
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQ

SwissProt top hits

e value

%identity

Alignment

O64645 MADS-box protein SOC1

6.2e-26

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL
        MVRGK +MKRIEN+TSRQVTFSKRRNG+LKKA+ELSVLCDAEVS+IIFS KG+LYEF+SS MQ TI+RY ++ K   +    SE  MQ L
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL

Q38838 Agamous-like MADS-box protein AGL14

5.8e-24

79.17

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEF-SSSIMQKTIERYRK
        MVRGK EMKRIEN+TSRQVTFSKRRNG+LKKA+ELSVLCDAEV++IIFS +G+LYEF SSS + KT+ERY+K
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEF-SSSIMQKTIERYRK

Q9FIS1 MADS-box protein AGL42

1.7e-31

76.67

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL
        MVRGK+EMK+IEN+TSRQVTFSKRRNG+LKKAYELSVLCDA++S+IIFSQ+GRLYEFSSS MQKTIERYRKY K  ET+   S+ ++Q L
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL

Q9FLH5 MADS-box protein AGL72

9.8e-24

63.74

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKG-GETNTFQSEGYMQGL
        MVRGK+E+K+IEN TSRQVTFSKRR+G+ KKA+ELSVLCDA+V+ +IFSQKGRLYEF+SS ++ TI+RY +Y +      T   E Y+QGL
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKG-GETNTFQSEGYMQGL

Q9XJ60 MADS-box transcription factor 50

1.8e-25

77.03

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGK
        MVRGK +MKRIEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEV++I+FS +G+LYEF+S+  QKTIERYR Y K
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGK

Arabidopsis top hits

e value

%identity

Alignment

AT2G45660.1 AGAMOUS-like 20

4.4e-27

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL
        MVRGK +MKRIEN+TSRQVTFSKRRNG+LKKA+ELSVLCDAEVS+IIFS KG+LYEF+SS MQ TI+RY ++ K   +    SE  MQ L
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL

AT5G62165.1 AGAMOUS-like 42

1.2e-32

76.67

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL
        MVRGK+EMK+IEN+TSRQVTFSKRRNG+LKKAYELSVLCDA++S+IIFSQ+GRLYEFSSS MQKTIERYRKY K  ET+   S+ ++Q L
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL

AT5G62165.2 AGAMOUS-like 42

1.2e-32

76.67

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL
        MVRGK+EMK+IEN+TSRQVTFSKRRNG+LKKAYELSVLCDA++S+IIFSQ+GRLYEFSSS MQKTIERYRKY K  ET+   S+ ++Q L
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL

AT5G62165.3 AGAMOUS-like 42

1.2e-32

76.67

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL
        MVRGK+EMK+IEN+TSRQVTFSKRRNG+LKKAYELSVLCDA++S+IIFSQ+GRLYEFSSS MQKTIERYRKY K  ET+   S+ ++Q L
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL

AT5G62165.4 AGAMOUS-like 42

1.2e-32

76.67

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Query:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL
        MVRGK+EMK+IEN+TSRQVTFSKRRNG+LKKAYELSVLCDA++S+IIFSQ+GRLYEFSSS MQKTIERYRKY K  ET+   S+ ++Q L
Subjt:  MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGL

Sequences

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CDS sequence

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ATGGTTCGAGGAAAAGTTGAAATGAAACGGATTGAGAATTCGACAAGCCGTCAAGTGACATTCTCAAAGAGACGAAATGGGATATTGAAAAAGGCTTATGAGCTTTCTGT
TCTTTGTGATGCTGAAGTTTCTGTCATCATTTTCTCTCAGAAAGGAAGGCTCTATGAGTTCTCCAGCTCCATTATGCAAAAGACAATCGAACGCTACCGCAAGTATGGGA
AAGGTGGAGAAACCAACACTTTTCAATCCGAAGGATATATGCAGGGTTTGTACTAA

mRNA sequence

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Protein sequence

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MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGLY

CmoCh15G014630 (gene) of Cucurbita moschata (Rifu) v1 genome